Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g01009 | ATGATTGAGAAAATGGCGGACGACGAATTCTCAGACTGTTTTCTCCAAATCCCGCTCACCGGATCCAACCCTTCCAAGAAGAAAAGAAACCTCCCCGGAACTCCAGGTAAGTTTCTTCACAAACAAATTATTCAATATCCGGAAGCAGAAGTGATAGCGTTGTCACCAAAGACGTTGATGGCCACGAACCGATTCGTGTGTGAAATATGCGGAAAAGGGTTTCAGAGAGACCAAAATTTGCAACTACACAGACGAGGACATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAGTAAAGAACCAAAGAAGAGAGTGTATGTGTGTCCTGAGAAAAGCTGTGTTCATCACCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAAAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGCTCAAAGAGATACGCAGTGCAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACTCTATTTTCAAGGAGAGATAGCTTCATAACTCACAGAGCATTCTGCGATGCATTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATAATTTCAACTATAATTTAATGGGAGCGGGAAGCTGCAGAGATGATGAAACAGGGTTATTCATGGCTCAACAGTTGGGTTCAATTTTCAAGCCAATTTCAGTGAAGGAAGCAACAATGGCAATAAGCAGCAGTGGGGTTTCCTTAAGAAGCAATAATAATTACAACAATCTTCAAATGATTGGAGGGATGATGATGAATAATAATTCAGGAGGAGTAATGTACTGCGAAGATTCACTTTGGGGAAGCTCAGTACAAATGGGTGATTATAATCAAAATCAGGGGTTATTGATGAATAATGGGGGAGGGGTTTCTTCATTATACAGTCATCAATTACAACAACTGAATCAAACCCAGATGGGAAATATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGCCAACTTCTTCTACTACATCTGCCCCATCACTACTATTACTACAACAACAACAGGGGTTTTTGTTCAATAATAATGGGACTCAGTATTGTAATTCTTCTAGTACTACAAATCCAATTGTTGTTGTTGAGAATGGGAATAATGAGATGTACACTGCAAAACGGCGTCGTACTGAGAGTGAAATTGAGTGTGGAAGTGGAAGTGGAACAATGGGACCAGGAACAGGAGCAGGGGAGACAAGGGATTTTCTCGGAGTTGGTGCCAAAACTATATGTCACGCTTCAGCATCAATCAACGGATGGATTTAG | 1332 | 40.77 | MIEKMADDEFSDCFLQIPLTGSNPSKKKRNLPGTPGKFLHKQIIQYPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNNFNYNLMGAGSCRDDETGLFMAQQLGSIFKPISVKEATMAISSSGVSLRSNNNYNNLQMIGGMMMNNNSGGVMYCEDSLWGSSVQMGDYNQNQGLLMNNGGGVSSLYSHQLQQLNQTQMGNMSATALLQKAAEIGPTSSTTSAPSLLLLQQQQGFLFNNNGTQYCNSSSTTNPIVVVENGNNEMYTAKRRRTESEIECGSGSGTMGPGTGAGETRDFLGVGAKTICHASASINGWI | 443 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 18811623 | 18813114 | + | ClCG02G010310.2 | Cla02g01009 | 267135 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g01009 | 443 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 22 | 436 | - | - | |
Cla02g01009 | 443 | Gene3D | Classic Zinc Finger | 61 | 88 | - | - | |
Cla02g01009 | 443 | Gene3D | Classic Zinc Finger | 99 | 189 | - | - | |
Cla02g01009 | 443 | SUPERFAMILY | beta-beta-alpha zinc fingers | 64 | 161 | IPR036236 | - | |
Cla02g01009 | 443 | MobiDBLite | consensus disorder prediction | 397 | 417 | - | - | |
Cla02g01009 | 443 | SMART | c2h2final6 | 141 | 161 | IPR013087 | - | |
Cla02g01009 | 443 | SMART | c2h2final6 | 65 | 87 | IPR013087 | - | |
Cla02g01009 | 443 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 67 | 87 | IPR013087 | - | |
Cla02g01009 | 443 | Pfam | Zinc finger, C2H2 type | 65 | 87 | IPR013087 | - | |
Cla02g01009 | 443 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 22 | 436 | - | - | |
Cla02g01009 | 443 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 65 | 87 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g00228 | Cla-Chr2:2374002 | Cla02g01009 | Cla-Chr2:18811623 | 1.86E-137 | dispersed | |
Cla02g01009 | Cla-Chr2:18811623 | Cla07g01308 | Cla-Chr7:30249706 | 1.27E-107 | dispersed | |
Cla11g00071 | Cla-Chr11:967512 | Cla02g01009 | Cla-Chr2:18811623 | 1.46E-103 | dispersed | |
Cla02g01009 | Cla-Chr2:18811623 | Cla10g01937 | Cla-Chr10:35207330 | 1.13E-108 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60639 | PF00096 | zf-C2H2 | 0.0019 | CL0361 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g01009 | K25870 | - | csv:101211656 | 626.32 |