Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01009 ATGATTGAGAAAATGGCGGACGACGAATTCTCAGACTGTTTTCTCCAAATCCCGCTCACCGGATCCAACCCTTCCAAGAAGAAAAGAAACCTCCCCGGAACTCCAGGTAAGTTTCTTCACAAACAAATTATTCAATATCCGGAAGCAGAAGTGATAGCGTTGTCACCAAAGACGTTGATGGCCACGAACCGATTCGTGTGTGAAATATGCGGAAAAGGGTTTCAGAGAGACCAAAATTTGCAACTACACAGACGAGGACATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAGTAAAGAACCAAAGAAGAGAGTGTATGTGTGTCCTGAGAAAAGCTGTGTTCATCACCATCCATCAAGAGCTTTGGGAGATCTTACAGGGATAAAAAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGCTCAAAGAGATACGCAGTGCAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACTCTATTTTCAAGGAGAGATAGCTTCATAACTCACAGAGCATTCTGCGATGCATTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATAATTTCAACTATAATTTAATGGGAGCGGGAAGCTGCAGAGATGATGAAACAGGGTTATTCATGGCTCAACAGTTGGGTTCAATTTTCAAGCCAATTTCAGTGAAGGAAGCAACAATGGCAATAAGCAGCAGTGGGGTTTCCTTAAGAAGCAATAATAATTACAACAATCTTCAAATGATTGGAGGGATGATGATGAATAATAATTCAGGAGGAGTAATGTACTGCGAAGATTCACTTTGGGGAAGCTCAGTACAAATGGGTGATTATAATCAAAATCAGGGGTTATTGATGAATAATGGGGGAGGGGTTTCTTCATTATACAGTCATCAATTACAACAACTGAATCAAACCCAGATGGGAAATATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGCCAACTTCTTCTACTACATCTGCCCCATCACTACTATTACTACAACAACAACAGGGGTTTTTGTTCAATAATAATGGGACTCAGTATTGTAATTCTTCTAGTACTACAAATCCAATTGTTGTTGTTGAGAATGGGAATAATGAGATGTACACTGCAAAACGGCGTCGTACTGAGAGTGAAATTGAGTGTGGAAGTGGAAGTGGAACAATGGGACCAGGAACAGGAGCAGGGGAGACAAGGGATTTTCTCGGAGTTGGTGCCAAAACTATATGTCACGCTTCAGCATCAATCAACGGATGGATTTAG 1332 40.77 MIEKMADDEFSDCFLQIPLTGSNPSKKKRNLPGTPGKFLHKQIIQYPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNNFNYNLMGAGSCRDDETGLFMAQQLGSIFKPISVKEATMAISSSGVSLRSNNNYNNLQMIGGMMMNNNSGGVMYCEDSLWGSSVQMGDYNQNQGLLMNNGGGVSSLYSHQLQQLNQTQMGNMSATALLQKAAEIGPTSSTTSAPSLLLLQQQQGFLFNNNGTQYCNSSSTTNPIVVVENGNNEMYTAKRRRTESEIECGSGSGTMGPGTGAGETRDFLGVGAKTICHASASINGWI 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18811623 18813114 + ClCG02G010310.2 Cla02g01009 267135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01009 443 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 436 - -
Cla02g01009 443 Gene3D Classic Zinc Finger 61 88 - -
Cla02g01009 443 Gene3D Classic Zinc Finger 99 189 - -
Cla02g01009 443 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Cla02g01009 443 MobiDBLite consensus disorder prediction 397 417 - -
Cla02g01009 443 SMART c2h2final6 141 161 IPR013087 -
Cla02g01009 443 SMART c2h2final6 65 87 IPR013087 -
Cla02g01009 443 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Cla02g01009 443 Pfam Zinc finger, C2H2 type 65 87 IPR013087 -
Cla02g01009 443 PANTHER ZINC FINGER PROTEIN MAGPIE 22 436 - -
Cla02g01009 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00228 Cla-Chr2:2374002 Cla02g01009 Cla-Chr2:18811623 1.86E-137 dispersed
Cla02g01009 Cla-Chr2:18811623 Cla07g01308 Cla-Chr7:30249706 1.27E-107 dispersed
Cla11g00071 Cla-Chr11:967512 Cla02g01009 Cla-Chr2:18811623 1.46E-103 dispersed
Cla02g01009 Cla-Chr2:18811623 Cla10g01937 Cla-Chr10:35207330 1.13E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60639 PF00096 zf-C2H2 0.0019 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01009 K25870 - csv:101211656 626.32