Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01042 ATGTCACCATCGGGCTTCTGCTTGAGGTTCAATCTCCGAATCTCCATCGCAGGCCGTGTTTCAAGTTTCCATCACAAAGTTACTCCCATGGCTTCCACTTCGACCAAGGATGTTGTTGCTGATGAGAAGACAGCGTCATCAGAAAACAAAAATACCAAAAGTGAAACACCCAAAAGTGAAACATCCAAAAGGGAAACATCCTCTGCAGAACAGCAGCCAGATAAACCAAAATCTACCTCTGCTTCACCTCACGAAGGAGAATTTCCTCCAAATCCTTTTGATTTCTCAGCAATGACTGGTTTGCTTAATGAAGTTAATTGGGATAAAAGAAGTGTTAAATCGCCAATTGACCCACAAGCTTCTTTTGGGTCAATTGGCGATTTAAGATGGTATCAGAACAGATTGAAGTGCAAAGCTGGTAAACTACCCTTCTTATACTTGGGTTTGCCTCTTGGAGGATATCCAAAACAGCACCCATTTTGGCAACCAATTCACAAAGTGCACTTGAAGCTAAATAGATGGAAAAGGGAGGTTAAAAGTATTCACGGTTCAGATCCTCACAATTGGCACACGTCTGGTAAGCATGGGTTGAGTTTGAGAAGGCTTGGATCAGCATATCAAAGGTTTGGGACAAGTTTCGTTCCTTTGCACACTTCAAACTTGGAGAAGGTAGGAACATCAATTTTTGGACTGATGCTTGGTGTTCGGAAGTCTCTTTTCAGAAGAGTTTTCCAAGATTATTTCATCTCAAAGATGAAGAGGTTTTTGGGTTTGGGGATTGGAGTCATCTGGAAGGATCCTAGCATTCAAGAATTAGCTTCTCAAATAGCAAAAGATCCTGCATTTAATCAGATGGCATCGCAACTTCAGAAGACTTTTCAAGGTGCTTCTGCTCAGCAGGGTATTCCTCAGTTTGATACACAACAATACTATTCTACCATGCAGCAGGTCATGCAGAATCCTCAATTCATGACAATGGCTGAGCGCCTTGGCAATGCATTAATGCAGGATCCATCCATGTCTAGCATGCTGGAAACTTTTGCAAATCCATCAAATAAAGAGCAGCTTGAGGAACGTATGGCACAAATCAAGGAAGATCCAAGTTTGAAGCCAATTTTAGATGAAATAGAGACTGGTGGTCCAGCTGCCATGATGAGGTACTGGAATGACAGAGATGTCTTGAAAAAATTGGGCGAAGCAATGGGTTTTGCAGTTTATGGAGATGCTGCCAATGCTGAAAGTTCTGCTGCAGATGATTCAGAAGAAATAGGGAATGATGATGAATCTGTAGTTCATCAAACTGCTAGTGTCGGTGATGCTGAGGGCTTAAAAACTGCACTGGCAGCTGGTGCAAACAAAGACGAAGAAGATTCAGAGGGAAGGACCGCATTGCATTTTGCATGTGGGTATGGCGAGGCGAAATGCGCTCAGATCCTTCTCGAAGCTGGAGTGAAGGTGGATGCACTGGATAAGAATAAGAACACTGCACTTCATTATGCAGCTGGTTATGGCAGGAAGGAGTGTGTTGCACTATTACTAGAGAATGGCGCGGCAGTCACTCTCCAAAACTTGGATGGAAAGACTCCCATAGATGTTGCCAAGCTAAACAACCAACACGAGGTGCTAAAATTGCTCGAGAAGGACGTTTTCCTGTAA 1656 43.18 MSPSGFCLRFNLRISIAGRVSSFHHKVTPMASTSTKDVVADEKTASSENKNTKSETPKSETSKRETSSAEQQPDKPKSTSASPHEGEFPPNPFDFSAMTGLLNEVNWDKRSVKSPIDPQASFGSIGDLRWYQNRLKCKAGKLPFLYLGLPLGGYPKQHPFWQPIHKVHLKLNRWKREVKSIHGSDPHNWHTSGKHGLSLRRLGSAYQRFGTSFVPLHTSNLEKVGTSIFGLMLGVRKSLFRRVFQDYFISKMKRFLGLGIGVIWKDPSIQELASQIAKDPAFNQMASQLQKTFQGASAQQGIPQFDTQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSSMLETFANPSNKEQLEERMAQIKEDPSLKPILDEIETGGPAAMMRYWNDRDVLKKLGEAMGFAVYGDAANAESSAADDSEEIGNDDESVVHQTASVGDAEGLKTALAAGANKDEEDSEGRTALHFACGYGEAKCAQILLEAGVKVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNLDGKTPIDVAKLNNQHEVLKLLEKDVFL 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21282575 21292335 + ClCG02G010650.1 Cla02g01042 267168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01042 551 ProSiteProfiles Ankyrin repeat region circular profile. 492 523 - -
Cla02g01042 551 SMART ANK_2a 492 521 IPR002110 GO:0005515
Cla02g01042 551 SMART ANK_2a 426 455 IPR002110 GO:0005515
Cla02g01042 551 SMART ANK_2a 525 551 IPR002110 GO:0005515
Cla02g01042 551 SMART ANK_2a 459 488 IPR002110 GO:0005515
Cla02g01042 551 Pfam STI1 domain 358 402 IPR041243 -
Cla02g01042 551 SUPERFAMILY Ankyrin repeat 419 546 IPR036770 -
Cla02g01042 551 Pfam Ankyrin repeats (3 copies) 432 523 IPR002110 GO:0005515
Cla02g01042 551 Gene3D - 407 496 IPR036770 -
Cla02g01042 551 PANTHER - 264 551 - -
Cla02g01042 551 MobiDBLite consensus disorder prediction 30 93 - -
Cla02g01042 551 PANTHER - 73 109 - -
Cla02g01042 551 Gene3D - 497 548 IPR036770 -
Cla02g01042 551 MobiDBLite consensus disorder prediction 41 71 - -
Cla02g01042 551 ProSiteProfiles Ankyrin repeat profile. 492 524 IPR002110 GO:0005515
Cla02g01042 551 ProSiteProfiles Ankyrin repeat region circular profile. 459 491 - -
Cla02g01042 551 ProSiteProfiles Ankyrin repeat profile. 459 491 IPR002110 GO:0005515
Cla02g01042 551 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 73 109 - -
Cla02g01042 551 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 264 551 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01042 - - - csv:101215197 546.969
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla02g00315 Cla02g01042 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01042 Cla-Chr2:21282575 Cla09g01429 Cla-Chr9:26922936 3.43E-18 dispersed
Cla05g00442 Cla-Chr5:3947041 Cla02g01042 Cla-Chr2:21282575 1.49E-11 dispersed
Cla10g00851 Cla-Chr10:19518958 Cla02g01042 Cla-Chr2:21282575 2.27E-06 dispersed
Cla01g02013 Cla-Chr1:34746997 Cla02g01042 Cla-Chr2:21282575 1.56E-09 transposed
Cla02g00387 Cla-Chr2:3732695 Cla02g01042 Cla-Chr2:21282575 8.53E-14 transposed
Cla02g01131 Cla-Chr2:24437692 Cla02g01042 Cla-Chr2:21282575 1.18E-19 transposed
Cla02g02218 Cla-Chr2:37301749 Cla02g01042 Cla-Chr2:21282575 1.31E-15 transposed
Cla10g01890 Cla-Chr10:34798988 Cla02g01042 Cla-Chr2:21282575 2.71E-06 transposed
Cla02g00315 Cla-Chr2:3055696 Cla02g01042 Cla-Chr2:21282575 6.54E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002762 0 3 2 2 2 2 2 1 1 1 2 1 1 2 2 1 1 3 2 1 2 2 2 2 2 2 2 7 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01042 Cla_Chr02 FPKM 35.949276 36.017723 35.938763 34.762642 29.32267 23.21324 28.59199 30.444817 32.10273 34.803497