Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01046 ATGGAGCAGAAGCTTGAAACCAAAGGCAAAGGCAAAGTCTGCGTTACTGGAGCTTCTGGGTTTTTTGCTTCTTGGCTTGTTAAGCGATTGCTTTTGTCTGGCTATCATGTGATTGGTACTGTTAGGGATCCAGGGAATGTGAAGAAGGTGGATCATCTATGGAGATTGGAAGGAGCCAAGGAGAGGCTTCGACTCGTCAAGGCTGATTTGATGGAACCTGGGAGCTTTGATGATGCTGTAATGGGATGTCACGGCGTTTTCCACACGGCTTCCCCTGTCTTAGATGCTACACATTCCAAGGCAGAAACATTGGAACCAGCTATTGAGGGCACATTGAATGTGCTTCGTTCATGCAGGAAGAACCCATCTCTAAGGCGTGTGGTGCTCACTTCATCTTCTTCAACTGTTAGAGTTAGAGAAGAGTTTGACCCCAAAATACCATTGGATGAGTCATCTTGGACCTCTGTTGAACTGTGTGAGAGACTTAAGCTGTGGTATGCTCTTGCGAAAACTCTAGCAGAAAAGGCAGCTTGGGAATTCTGCAACGAAAATGGAATCGATTTAGTAACCGTGCTCCCTTCGGTGATCATTGGGCCTAGTTTGTCGCCGGATTTATGTTATACAGCAACTATTGTCCTTGGCCTGCTTAAAGGGGAGACTGAGGCTTTCCAATCACTTGGAAGGGTAGGATATGTTCACATTGATGATGCTGCCCTCTCCCACATCCTTGCCTTTGAGAACCAAGACGCTCAAGGCAGATACATTTGCTCCTCAATTGTGCTGGAAATCGACGACTTGGCATCGCGCTTATCGTCCCGCTATCCGTTATTCCCTATTTCGAAAAGGTTTGAGGCATCAAACAGACCATATTATGATTACAACATGTCAAAGGTTGAGAAATTGGGGATGAAGTTCAAGTCTGTGGAAGAGATGTTTGATGACTGCATTGCTTCTCTCTTGGAGCAAGGCCATCTTTCTTCACCTTAA 987 45.8 MEQKLETKGKGKVCVTGASGFFASWLVKRLLLSGYHVIGTVRDPGNVKKVDHLWRLEGAKERLRLVKADLMEPGSFDDAVMGCHGVFHTASPVLDATHSKAETLEPAIEGTLNVLRSCRKNPSLRRVVLTSSSSTVRVREEFDPKIPLDESSWTSVELCERLKLWYALAKTLAEKAAWEFCNENGIDLVTVLPSVIIGPSLSPDLCYTATIVLGLLKGETEAFQSLGRVGYVHIDDAALSHILAFENQDAQGRYICSSIVLEIDDLASRLSSRYPLFPISKRFEASNRPYYDYNMSKVEKLGMKFKSVEEMFDDCIASLLEQGHLSSP 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21369239 21373439 + ClCG02G010690.1 Cla02g01046 267172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01046 328 Pfam NAD dependent epimerase/dehydratase family 13 250 IPR001509 -
Cla02g01046 328 PANTHER OS08G0515900 PROTEIN 8 325 IPR033267 GO:0009555|GO:0080110
Cla02g01046 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 320 IPR036291 -
Cla02g01046 328 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 325 - -
Cla02g01046 328 CDD FR_SDR_e 13 302 - -
Cla02g01046 328 Gene3D - 2 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01046 - - - csv:101215440 606.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01046 Cla-Chr2:21369239 Cla02g02233 Cla-Chr2:37473053 5.04E-84 dispersed
Cla05g00107 Cla-Chr5:1004572 Cla02g01046 Cla-Chr2:21369239 2.99E-41 transposed
Cla05g02302 Cla-Chr5:34623679 Cla02g01046 Cla-Chr2:21369239 4.20E-90 transposed
Cla06g00036 Cla-Chr6:410604 Cla02g01046 Cla-Chr2:21369239 1.62E-65 transposed
Cla10g00593 Cla-Chr10:8741633 Cla02g01046 Cla-Chr2:21369239 6.71E-57 transposed
Cla10g00724 Cla-Chr10:11568652 Cla02g01046 Cla-Chr2:21369239 8.05E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g326 . Blo15g00406 Bda06g00456 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01046 . Cec02g1119 Cco02g1153 Clacu02g1100 Cmu02g1060 Cre02g1368 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005971 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 3 4 1 2 2 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01046 Cla_Chr02 FPKM 31.750725 35.052101 66.940109 78.422112 26.206421 14.847185 23.412855 21.81958 17.965254 24.472095