Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01055 ATGTCAAAGCAGAATGGACCCTTGTCTTCTCTAAAACTAAAAGGCAGCCTTCCTCTTCTCCTCAAATTTGTCAAGAGTCTCTACATTCCATCATTGTTGTGTATTGTACCAAAAACCTTCCGAGCCATGAATTTCAAATCTCTCCATTTTCTCCTTTCCATTATAACCTTTTTCTTGTTTCTCTCAATTTCTACTTCTGACAAAGACCCATCTTCTTCCTCTGCAATCATATCAAGGTTCCAACAATACCTTCAGATTAATACCGTCCAACCCAGCCCCAAATACTATGAAGCTGCTGATTTCATCATTTCTCAGGCCAAATCGCTCTCCCTTGAATCTAGGACAATTGAATTCGTCGCGGGCAAGCCTCTGGTTCTCCTCAAATGGCCTGGTTCCAACCCTGATCTCCCCTCGATCCTCCTTAATTCGCATACCGATGTTGTTCCAGCTGAGCATCACAAATGGACGCACCCTCCTCTTGGAGCTCATATCGATTCCCATGGCAATATCTATGCCAGAGGGTCTCAGGATATGAAGTGCGTTGGGATGCAGTACCTTGAGGCTATTCGGCGTTTGAAGGAATCTGGGTTTGAGCCTCTGCGCTCTGTTTACCTATCTTTTGTTCCGGATGAAGAAATTGGTGGCCATGGCGGTGCTGAGAAATTTGCTGAATCTGATGAGTTCGAGAAATTGAATGTCGCCATTGTGCTTGATGAAGGGTTGCCTTCTCCGGGTGAGAATTATAGGGTGTTTTATGGGGAGAAGAGCCCCTGGTGGTTGGTGATCAAGGCAGTTGGAGCGCCAGGTCATGGAGCTAAGCTTTATGATAACACTGCCTTGGAGAATCTTTTCAAAAGCATTGAGACTGTCAGAAGGTTTAGAGCTTCACAGTTTGATTTGATCAAGTCTGGTTTGAAGACTGAAGGAGATGTTGTCTCTGTCAATATGGTCTTCTTAAAATCTGGCACTCCATCTCCTACTGGCTTTGTCATGAATCTGCAGCCATCTGAAGCTGAGGCTGGTTTTGATGTTCGCCTCCCACCGACTGCAAATCCAGAGTCTCTTGAGAGACGAATTGCAGAGGAATGGGCACCAGCTTCTCGTAATATGACGTTTGAGTTTAAGCAGAAGGAATCTATTTACAACAAGTTTGGGAAACCAGCTCTTACTGCTATTGACAAATCTAACCCATGGTGGAATCTTCTTGAAGAAGCTGTAAGAAATGCCAATGGAAAACTTGCAAACCCAGAAATCTTTCCTGCTTCAACGGATGCCCGATACTTTCGAAATCTTGGCCTTCCTGCAATTGGCTTCTCTCCAATGGCCAACACTCCTATTCTTCTTCATGACCATAATGAGTTTCTGAACCAAGCTGAGTATTTGAAAGGCATTGAGGTGTACGAGTCAATAATCAAGGCTTATGCTTCTTATGACGATGAAAAATCGACCGAGAGCTTCAAAGATGAGTTATAA 1473 44.06 MSKQNGPLSSLKLKGSLPLLLKFVKSLYIPSLLCIVPKTFRAMNFKSLHFLLSIITFFLFLSISTSDKDPSSSSAIISRFQQYLQINTVQPSPKYYEAADFIISQAKSLSLESRTIEFVAGKPLVLLKWPGSNPDLPSILLNSHTDVVPAEHHKWTHPPLGAHIDSHGNIYARGSQDMKCVGMQYLEAIRRLKESGFEPLRSVYLSFVPDEEIGGHGGAEKFAESDEFEKLNVAIVLDEGLPSPGENYRVFYGEKSPWWLVIKAVGAPGHGAKLYDNTALENLFKSIETVRRFRASQFDLIKSGLKTEGDVVSVNMVFLKSGTPSPTGFVMNLQPSEAEAGFDVRLPPTANPESLERRIAEEWAPASRNMTFEFKQKESIYNKFGKPALTAIDKSNPWWNLLEEAVRNANGKLANPEIFPASTDARYFRNLGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIEVYESIIKAYASYDDEKSTESFKDEL 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21891120 21894570 + ClCG02G010790.1 Cla02g01055 267181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01055 490 PIRSF ACY-1 66 479 - -
Cla02g01055 490 Gene3D Zn peptidases 67 258 - -
Cla02g01055 490 Pfam Peptidase family M20/M25/M40 140 472 IPR002933 GO:0016787
Cla02g01055 490 PANTHER AMINOACYLASE-1 61 481 - -
Cla02g01055 490 SUPERFAMILY Zn-dependent exopeptidases 74 475 - -
Cla02g01055 490 PANTHER BNAA06G40880D PROTEIN 61 481 - -
Cla02g01055 490 Gene3D - 396 476 - -
Cla02g01055 490 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 175 214 IPR001261 -
Cla02g01055 490 TIGRFAM Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase 71 476 IPR010159 GO:0004046|GO:0005737|GO:0006520
Cla02g01055 490 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 139 148 IPR001261 -
Cla02g01055 490 Gene3D - 259 369 - -
Cla02g01055 490 CDD M20_AcylaseI_like 73 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01055 K14677 ACY1; aminoacylase [EC:3.5.1.14] - csv:101213747 820.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01055 Cla-Chr2:21891120 Cla06g01647 Cla-Chr6:29990512 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g310 . . . . . . . . . . Cma02g00306 . Car02g00185 . . . . . . . . . . . . . . . . . . . . Cone17ag1276 . . . . . . . . . . . . . . Cmo02g00300 . . . . . . Cpe05g01333 . . . . . . . Cla02g01055 Cam02g1127 Cec02g1131 Cco02g1169 Clacu02g1115 Cmu02g1078 Cre02g1382 . . . Cme11g01027
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011281 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01055 Cla_Chr02 FPKM 8.106745 9.694318 14.026079 13.850868 11.367312 13.092565 14.096454 19.454273 20.28373 23.733177