Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01056 ATGAGAAGTGCAACTTTAATGTTGAAGCTTGCTCCGAGCTTTTGTTCAGTGTCGGCCTACTCGTTAGTCGACAAGTTCACGAAGTTTTGCTATCAGAGGGATCTTCCAAGAGCCATGAAAGCGATGGAAGCGATGCAGAGAAACCGTCTCTGGGCTGATGCAATTACTTACTCCGAGCTCATCAAGTGCTGCCTTGTTCGTGGGGCTGTAGAACAAGGTCGGCTTGTTCATAAGCATGTTTTCTCAAATGGGTACGAGCCCAAAACATTCTTGATCAATACTCTACTTAATATGTATGTGAAATTCGGCCTCTTGGATGAAGCCCAGAATCTGTTCGACGAAATGCCTGACAGGAATATTGTCTCTTGGACGACTATGATATCTGCTTACGCCAATTCCAATCTTAATCATAAGGCGTTGGAGTTTCTGACATTGATGCTTAGAGAAGGTGTTCAACCAAATATGTTTACGTATTCTTCTGTTTTGAGAGCTTGCGATGGTTTGTTGAACGTCAGGCAGCTACATGGTGGTATAATGAAGGTGGGTTTGGAATCTGATGTCTTTGTAAGGAGTGCTCTGATCGACACTTACTCAAAATTGGGTGAACAGCAAGATGCTTTGAATGTTTTTAGTGAGATGGTTACAGGTGATTTGGTTGTGTGGAACTCCATTATTGGTGGTTTTGCTCAGAACAGTGATGGGGATGAAGCTTTACATCTTTATAAGAGAATGAAGAGAGCTGGTTTTGCTGCTGATCAGTCTACATTAACTAGTGTTTTGCGAGCCTGCACTGGGCTAGCGCTCCTAGAGTTGGGCAGACAAGTCCATGTCCATGTATTGAAGTATGATCAGGATCTAATCCTTAACAACGCACTTCTTGACATGTATTGCAAATGTGGCAGTCTAGAAGATGCAAACCTTGTTTTCACTAGGATGATGACAGAGAAGGATGTCATCTCATGGAGCACTATGATTGCAGGATTAGCTCAAAATGGCTTTAGTACAGACGCACTCAAATTATTTGAATCAATGAAATCTAAAGGGCCAAAGCCAAATTATATCACTGTACTTGGGGTTCTTTTTGCCTGTAGTCATGCGGGGCTTGTAAATGATGGATGGTACTATTTTCAATCTATGAAAGAGCTTTTTGGGATTGATCCTGGAAGGGAGCACTATGGGTGCATAATTGATCTTCTTGGAAGAGCTGGAAAGCTTGATGAAGCTGTGAAGTTGATCCATGAAATGAACCATGAACCAGATGCAGTGACATGGCGCATCTTGCTTGGTGCTTGCAGAGTCCACAAGAATGTGGATTTAGCCATATATTCTGCTAAACAAATCCTGAAACTGGATCCCGCCGATGCCGGGACGTACATATTGTTATCGAATATTTATGCCAATTCCCAGAAATGGGAAGATGTTGCAGAAGTTAGGAGGAGGATGAGAGCTAGGGGAGTGAAGAAAGAACCAGGATGCAGTTGGATTGAAGTGAGCAAACAAGTTCATGCTTTTATGTTGGGTGACAACTCGCATCCAAGAATAATAGAGATAAAGAGGGAGCTAAGCCAATTAATTCAAAGATTAATAAGGGTGGGTTATGTTCCAGATACAAATTTTGTGCTCCAGGATCTTGAAGGAGAACAGATGGAGGATTCCCTTCAATACCACAGTGAGAAACTGGCAATTGTGTTTGGTTTGATGAGTTTGCCAAATCAAAAAACCATTCATATAAGGAAAAACCTCAGAATCTGTGGGGACTGTCATATCTTTGCAAAACTTGTCGCACAGTTGGAGAATAGAGTCATCATCATTCGAGATCCTATTCGGTACCATCATTTTTGGGGTGGTGTGTGCTCTTGTGGTGATTACTGGTGA 1875 42.19 MRSATLMLKLAPSFCSVSAYSLVDKFTKFCYQRDLPRAMKAMEAMQRNRLWADAITYSELIKCCLVRGAVEQGRLVHKHVFSNGYEPKTFLINTLLNMYVKFGLLDEAQNLFDEMPDRNIVSWTTMISAYANSNLNHKALEFLTLMLREGVQPNMFTYSSVLRACDGLLNVRQLHGGIMKVGLESDVFVRSALIDTYSKLGEQQDALNVFSEMVTGDLVVWNSIIGGFAQNSDGDEALHLYKRMKRAGFAADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANLVFTRMMTEKDVISWSTMIAGLAQNGFSTDALKLFESMKSKGPKPNYITVLGVLFACSHAGLVNDGWYYFQSMKELFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYSAKQILKLDPADAGTYILLSNIYANSQKWEDVAEVRRRMRARGVKKEPGCSWIEVSKQVHAFMLGDNSHPRIIEIKRELSQLIQRLIRVGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVAQLENRVIIIRDPIRYHHFWGGVCSCGDYW 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22029630 22031504 - ClCG02G010810.1 Cla02g01056 267182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01056 624 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, MITOCHONDRIAL 13 567 - -
Cla02g01056 624 Gene3D Tetratricopeptide repeat domain 171 267 IPR011990 GO:0005515
Cla02g01056 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 118 IPR002885 -
Cla02g01056 624 Pfam DYW family of nucleic acid deaminases 532 624 IPR032867 GO:0008270
Cla02g01056 624 Pfam PPR repeat 384 415 IPR002885 -
Cla02g01056 624 Pfam E+ motif 501 528 IPR046849 -
Cla02g01056 624 SUPERFAMILY TPR-like 99 475 IPR011990 GO:0005515
Cla02g01056 624 Pfam E motif 434 496 IPR046848 -
Cla02g01056 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Cla02g01056 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 53 87 IPR002885 -
Cla02g01056 624 Pfam PPR repeat 290 314 IPR002885 -
Cla02g01056 624 Pfam PPR repeat 191 214 IPR002885 -
Cla02g01056 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 315 IPR002885 -
Cla02g01056 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Cla02g01056 624 Pfam PPR repeat family 118 165 IPR002885 -
Cla02g01056 624 Pfam PPR repeat family 316 362 IPR002885 -
Cla02g01056 624 Pfam PPR repeat family 217 263 IPR002885 -
Cla02g01056 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Cla02g01056 624 PANTHER OS01G0913400 PROTEIN-RELATED 13 567 - -
Cla02g01056 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Cla02g01056 624 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Cla02g01056 624 TIGRFAM PPR: pentatricopeptide repeat domain 92 121 IPR002885 -
Cla02g01056 624 TIGRFAM PPR: pentatricopeptide repeat domain 219 252 IPR002885 -
Cla02g01056 624 TIGRFAM PPR: pentatricopeptide repeat domain 290 315 IPR002885 -
Cla02g01056 624 TIGRFAM PPR: pentatricopeptide repeat domain 392 415 IPR002885 -
Cla02g01056 624 TIGRFAM PPR: pentatricopeptide repeat domain 121 154 IPR002885 -
Cla02g01056 624 Gene3D Tetratricopeptide repeat domain 290 510 IPR011990 GO:0005515
Cla02g01056 624 Gene3D Tetratricopeptide repeat domain 23 170 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01056 - - - csv:101213511 1184.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01056 Cla-Chr2:22029630 Cla05g00861 Cla-Chr5:8519771 2.23E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g309 . . . . . . . . . . . . . Car20g00609 . . . . . . . . . . . . . . . . . . . Cone3ag1256 . . . . . . . . . . . . . . . Cmo20g00704 . . . . Cpe16g00356 . . . . . . . . Cla02g01056 . . . . . . . . . Cme11g01030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003057 1 1 0 0 1 1 2 0 1 2 2 0 1 2 2 2 0 2 1 1 1 1 1 1 1 2 2 0 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01056 Cla_Chr02 FPKM 28.492126 32.901146 22.074327 22.013741 29.516699 31.485697 34.392082 10.034765 11.521142 11.689921