Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01065 AGTGTGGCAGAAGAGACAGAAAGGTTTTTGGGTTTGTCGCTGGATTTTCTTTCTAAATTTGCAAAGATGGAGTTCTGGGGTCCTTTGGAATTCTTTTACGTGTTCTTCATATTTCCAAAGACTTGTTTTGTACCTGAAATTTTGATCAGAATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGTGTCATCCTTGTAAATACAGCCTTATCAATTTCTATCTTCAAAGGGATAGTTCGGTCAATTCTCCATGTTGTTGGCATCCATCTCTCGTCGTCGCCTACATTACCATCTTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAACCCAAATGGAAGTTACATTGAAGAGTTCCACAGCCGAATTCCAGCAATTCTGTTCGACAAAGTTCATAGCTGCAAATGGCTCGAACACGACTGCTCGGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGCCATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGTCCACTTTGTCGAACTCCACTAGTGCCCGAAGAAGACACAGCTTCCTGCTTTTGGTGA 618 43.85 SVAEETERFLGLSLDFLSKFAKMEFWGPLEFFYVFFIFPKTCFVPEILIRMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFHSRIPAILFDKVHSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLVPEEDTASCFW 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22265318 22267600 - ClCG02G010900.1 Cla02g01065 267191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01065 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 196 IPR013083 -
Cla02g01065 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 51 205 - -
Cla02g01065 205 SMART ring_2 149 190 IPR001841 -
Cla02g01065 205 Pfam Ring finger domain 148 191 IPR001841 -
Cla02g01065 205 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Cla02g01065 205 PANTHER - 51 205 IPR044249 -
Cla02g01065 205 SUPERFAMILY RING/U-box 138 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01065 Cla-Chr2:22265318 Cla06g00326 Cla-Chr6:4181289 2.82E-14 dispersed
Cla02g01065 Cla-Chr2:22265318 Cla01g00245 Cla-Chr1:2467004 8.78E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01065 K16285 - csv:101216645 320.087