Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01079 ATGGGTAGTGTGTCCTCCGATGACGGCTCCGACCAACTCAGCGAGCGTTGTGGGAGCTACAGTTTGAGTGCAGATGTCAGTGAGTCAGAGAGTTGTAGTAGCTTTTCTTGCCGGAGGTTTGATGGTGAAGGAGCTTCCAGCTCAATGGCCTCTTCTCCGCATCCTGTTTCTGGGAACTTTTGCTTTCCGCCGCCGGTTTCCTTGCCGGTGCTTGGAGGCAAGGATGTTTTTGTTTGGGATGACAAGTCTAAGAAACGGGACGCTGATTTATCTGAAGTTGAGATGATGAAGGAGAGATTTGCCAAACTCCTCCTTGGCGAAGACATGTCAGGGGGAGGGAAAGGGGTTTGCACAGCCCTTGCTATCTCAAATGCCATTACCAATCTCTCTGCTAGTGTATTTGGTGAATTATGGAGATTGGAGCCACTGGCACCACAAAAAAGAGCAATGTGGCATCGAGAAATGGAATGGCTTCTATGTGTTTGTGATTCCATTGTGGAGCTTGTTCCTACGGTTCAGCCTTTCCCCGGTGGAGGTACCTATGAAGTAATGATGTCTAAACCACGCTCGGACTTGCACATGAATCTTCCTGCCTTAAAGAAGCTTGACGCATTGCTTCTTGGTATTCTTGGAGGGTTTTGCCATACAGAATTTTGGTATGTTGATCGGGGAATAGTTCTAGGTGACTTGAATGACTGTAACGATTTCCTGCCCGGTGGAAGGCCTTCAATTAGGCAAGAAGATAAATGGTGGCTTCCTTGCCCAAAAGTTCCAGCAGATGGTCTGTCTGAAGATGCTAGAAAGCGGCTGCAGCAGTGTAGGGACTGTACTAATCAAATACTCAAAGCAGCCATGGCAATCAATAGTAATGTACTTGCAGAAATGGAAGTTCCTACTGCGTACATGGAAACCTTGCCTAAGAGTGGAAAAGCTTGCTTGGGCGATATCATTTATCGCTACATGACTGCTGACCACTTCTCGCCCGAGTGCCTCCTTGATTGCTTAGACCTTTCATCAGAGCATCACACCCTGGAAATAGCGAATAGGATCGAGGCTTCAATTCATATTTGGAGGCAAAAAGACCATAAAAGAAGCGGTCACCGCAGCAAGGGAAGACGACCAACTTGGAGTGGCAAGGTCAAGGGCATTGTTGGGGACCCTAGGAAGAGTAACAATTTGGCCCGGAGAGCCGAGACCCTTCTTGACAGTCTAAGACTTAGATTTCCAGGATTACCACAGACAGCATTAGACATGGCTAAGATCCAATATAACAAAAATGCTAAAAGCATTAAAAATGGACACAATCTAATGGCGAAAACTATCTTGCAGGATGTGGGGCAGTCAATTCTTGAGAGCTATTCAAGGGTGATGGAGAGTTTGGCTTTCAACATCATGGCACGGATTGACGACGTCCTATATGTAGACGATGCGATCAAGCGATGTGTTGAAGCAGAGTCGATCTCACTTTTCAACAGAGGTTTGGGTGGTCTTCCAATCCAGAAACGTATGTCTCCTAGCCCTTTCTCAATCCATCACAGCCCATTTGCCTCTCCATTTGCAACTCCAACATTCTGTTCCTCTACTCCCATTGGAGGAAGCCCAGGAAGATTATCCCCATCCCCAACTGTAAAAAGAAGCAATGTGAAAGAAGCAGCAGTTGTAAGAACAGACAAACAAAGCCAAAGTGACAAAGAGAAAATCTGGTCATATGCTGGAAATCTTAGTGGTAGAAGAGTCTCTGGGGTCACTCCAGAGAGAGATTGA 1764 46.49 MGSVSSDDGSDQLSERCGSYSLSADVSESESCSSFSCRRFDGEGASSSMASSPHPVSGNFCFPPPVSLPVLGGKDVFVWDDKSKKRDADLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSASVFGELWRLEPLAPQKRAMWHREMEWLLCVCDSIVELVPTVQPFPGGGTYEVMMSKPRSDLHMNLPALKKLDALLLGILGGFCHTEFWYVDRGIVLGDLNDCNDFLPGGRPSIRQEDKWWLPCPKVPADGLSEDARKRLQQCRDCTNQILKAAMAINSNVLAEMEVPTAYMETLPKSGKACLGDIIYRYMTADHFSPECLLDCLDLSSEHHTLEIANRIEASIHIWRQKDHKRSGHRSKGRRPTWSGKVKGIVGDPRKSNNLARRAETLLDSLRLRFPGLPQTALDMAKIQYNKNAKSIKNGHNLMAKTILQDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAIKRCVEAESISLFNRGLGGLPIQKRMSPSPFSIHHSPFASPFATPTFCSSTPIGGSPGRLSPSPTVKRSNVKEAAVVRTDKQSQSDKEKIWSYAGNLSGRRVSGVTPERD 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22890390 22893344 + ClCG02G011050.2 Cla02g01079 267205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01079 587 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 587 - -
Cla02g01079 587 Gene3D PRONE domain, subdomain 1 443 476 - -
Cla02g01079 587 MobiDBLite consensus disorder prediction 550 564 - -
Cla02g01079 587 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 91 479 IPR005512 GO:0005085
Cla02g01079 587 MobiDBLite consensus disorder prediction 530 545 - -
Cla02g01079 587 MobiDBLite consensus disorder prediction 361 381 - -
Cla02g01079 587 MobiDBLite consensus disorder prediction 361 375 - -
Cla02g01079 587 ProSiteProfiles PRONE domain profile. 83 485 IPR005512 GO:0005085
Cla02g01079 587 Gene3D PRONE domain, subdomain 1 83 230 - -
Cla02g01079 587 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 587 IPR038937 GO:0005085
Cla02g01079 587 MobiDBLite consensus disorder prediction 530 569 - -
Cla02g01079 587 Gene3D PRONE domain, subdomain 2 296 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01079 - - - csv:101206758 1072.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01079 Cla-Chr2:22890390 Cla11g00624 Cla-Chr11:7196620 9.10E-165 dispersed
Cla02g01079 Cla-Chr2:22890390 Cla04g00754 Cla-Chr4:22579853 3.82E-170 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g274 . . . . . . . Bma12g00866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi10g01221 Tan05g1085 . . . . . Cla02g01079 Cam02g1159 Cec02g1157 Cco02g1205 Clacu02g1150 Cmu02g1112 Cre02g1415 . . . Cme11g01244
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000066 11 10 10 15 11 8 15 8 8 9 8 8 14 8 8 15 8 15 12 8 8 8 7 8 9 7 8 16 13 6 299
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01079 Cla_Chr02 FPKM 14.331401 16.595375 21.533924 19.548929 43.673286 45.965015 44.502853 21.620621 23.632088 20.289188