Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01083 ATGGAGAAGAAGACACAGAGCAGTAGAAGAAGCCAACCCAAAAGCTCGGCTCGCGCAAAGGTATTTGGGACAAACGCTCTTCAGCTAAGTGAGGACGATGCCTCGCGATTAGTCGGTGGAATTGTTGAAAAAGGTATCTCAGACGCCGACCAACGCTCGCCGTTTGTCTCATTTCCCCCTCCCGCACCTTCCGTTTTGCCGTTTCCGGTCGCTCGACATCGCTCTCATGGTCCGGTAAGATTTCATCTATTTCATTGGGAATCAGTAACTAGTAAAAAGGGTGGGGATAACATCAAAGATGACCGGCAGGAGGATGGGGAAGAAGATGAAAGATTGATGGAGACCGACTCTATAGCAAATTTTGCTAACCCAATACAGAGGAAAAAGAAAAGTAGCTTAGACTTTGGCAGGTGGAGAGAGGCTGTCCCAGGCCACAACCATGGTGCAGCAAACATAGAGGAAAAGAAAGTTCCAAGCTTAGCAAAAACTCAAAACCTAATACGTGCTGGGGAAGCAAATAGCGATAGAGATAATAGGTTGTGCAAGCCCTCATCAGCCCATCTGCTTGCACCTTCTCTTATGAATATTGAACATAGTTCGGCTGACTTTGTAAATGATCCCACTGGAAACAAAACGAATGGAGCTGGTTTTGAGTTTGCGAGGTCAATGGATAACGTAGAATGTAAAGGGTTGGATAAACAACATCTTCCAGAGAATCTTCAAGATGTTCGTGATCAATGGGGACATATTTCAGAGAGTGAAGTTAATGAGGGGATGCCCCTTGATGGTTCTTCATTGCAGGACATGGGTACAGGGGTCCATCATTTGAATTCAGAAAGGACTCCTTGTTTTGAGTCCAATATTAAGGGAGAAGATGCATTCTCAACACTGGAGAGCCAGATTGATGCAGAGAACTGTACAAGGATACAAAGAATGACACCAGAAGAGATTGCTGAAGCACAGGCTGAGATAATGGAGAAGATGAACCCAGCACTAGTGAAAGCCCTGAAAATGAGGGGTGAGGGAAAATTGAAGAAGGGATCATCAAAGCCAGACGTAAGCAGCAAGTTGGGTAATCTACAAAAAGAGAGTACACTTGATAGAAATGGATCTCCCAACATAGAGAATGGTGTAACTACTGTAAAGACGACCTTAAAGGATACAAAGAGTGGACTTCAGGATGTTTCAGTGCAGAAATTTGATTCAGGTAGCAGTGTATGGAATGCATGGAATGAAAGGGTTGAAGCTATAAGGTCGTTAAGGTTTTCTCTGGAAGGGAATATAGTTGAAAGCTATTCTTTCCAACAGCCAGAGAATGGTGATCATGCAGTTCATGGGTACAGCACTGAGAATGTTGCTTCACGAGATTTTCTTCGAACTGAGGGGGATCCAAGTGCTGCAGGTTACACAATTAAAGAAGCTGTGGCCCTGACGAGGAGTGTGATACCAGGTCAGCGTGTCCTTGGGTTGCATGTCATTTTAAATTTGCTCGACAAGGCATTGCTTAATACACACCTAACACAAGTTGGGTCCACAATGGTTAAAAATAGTAGCTCTGTTGATTACATTGCAGTTTGGGCTTATACTCTTGGCCCTGAACCAGAGCTTGCTTTGTCACTGAGGCAGTGTTATGATTTTCAGTATCCTAGGTCACTTGATTTTTTTTTTATGTCAATGTTTAGGATGTGCCTGGACGATAATCATAACTCTGTCGTTCTAGCTTGTGCTGAAGTTATTCAGAGTGTATTGAGCTGTAATTTGAACGAGGCCTTCTTTGATACCCTAGAGAAAACATCAACTTACGAAAAGGATCTCTACACTGCTGCCGTATTCCGAAGTAAACCAGAGATTAATGTTGGGTTCCTCCAAGGTGGATTTTGGAAGTACAGTGCTAAACCTTCTAATATTCTTCCTTTTAGTGAAGATTTTGAGAATACTGAAGATGGAGAGAAACATACAATCCAGGATGATATTGTTGTTGCACAACAAGATATTGCAGCAGGTCTGGTTCGAATGGGAATTCTTCCTAGGCTCCGCTATCTTCTAGAGGCAGGTCCTTCAGTAGCTTTAGAAGATTGCATACTTTCAATACTTGTTGCAATAGCAAGGCATTCCCCAATATGTGCACAAGCAATCATGAAATTTGAAAGGCTTGTTGAGTTGATCATCAAGAGATTTACAATGAGCGACAAAATAGATATTCTTTCCTTAAAGATAAAATCCGTTGTCCTTTTGAAGGTTTTAGCTCGTTCAGACAGGAAGAACTGTATTGCGTTTGTGGAAAGTGGAGCTTTTCAAACCATTACATGGCATTTGTATCACTATACTTCCTCCATCGACCATTGGGTCAAGTCAGGGAAGGAAAAATGTAAACTTTCATCAACTTTGATGGTTGAACAATTAAGGCTGTGGAAGGTTTGCATTCAGTATGGATATTGTGTATCTTACTTTTCTGATATTTTTCCTGCCTTGTGCTTATGGTTGAACCCACCAAATTTTGAAAAACTTATAGAGAATAATGTCCTGCGTGAATTTACATCCATTTCTATGGAGGCATACCATGTTTTGGAGGCTTTGGCAAGAAGACTTCCTAATTTTTTTTCAGAGAAACATTTAGACAATCAAGAACCAGGACTTACTGGTAATGAATCTGAAATTTGGTCCTGGAGTTGTGCTGTTCCAATGGTTGATTTAGCTATAAAATGGTTAGAGTCAAGGAGTGATCCATTCATATCCAAATTCTTTGAGTCACAAAAAGGGATTAGGAATGACTTTGTGTTTGAAGGTATATCAGTGGCGCCATTGTTGTGGGTTTATTCAGCTGTCATGAAGATGCTGTCTCAAGTAGTTCAAAGGATCATCCCGCAGGATATTATATCTCTGGAAGGAAGTGATCAGACTGTGCCTTGGATACCAAAGTTTATACCACAAGTTGGACTTGAGATAATTAAGAATGACTTTCTGAGCTTTGCAGATGCATCTGATGTGAAACCCTATCCCTCTGGAGGTAACTCTTTTGTGGAGGATCTTTGTTTTTTGAGAGAACACAGTGAATTTGAAACGTCTCTGGCTTCTGTATGTTGTCTTCATGGGTTGATGCTGAGTATTGTGAATATTGATTGTCTGATCCAGTTAGCCAAGAGTGAGCGCCAGGATTATCCTCCCGGAGATCATAACTCCTCAAGGGAAGGGGAAATTTTAAGGGTTGGGATGTTTAAGATGTCCCTCATCGAACAGAGAAGCATGCTTGACCTTTTTACTAAGAAAATTGCTTTGGAGTGTGACTCTCTGCAGTTAATAGAGACCTTTGGCAGGGGGGGGCCTGCACCTGGGGTAGGAATTGGTTGGGGCGTGTCTGGTGGCGGATATTGGTCCCCTGCTGTTTTATTAGCACAAAACGATGCAGCATTTCTCATGTCCCTCATTGATGCATTTCAGACCATTCCAACTTCAAATATTCTGACTACTCAGGAATCCTTGACTGCGCAAAGCATAAATTCTGTATTGGCTGTATCCTTGGTTCTTGGGCCAAGAGATATAGGTTTGCTCGAGAAAACTGTGGAATTTTTGATCCAGGCTCCTATTTTGCATAATTTCAATTTTTATATTCAGAGTTTTCTCCAACTCAATGGAAAAGTGAAGCAATTTGGCTGGAAGTACAGTGAAGATGACTGCTTGATCTTTTGTAGAACATTAAGTTCTCACTACAAGGATAGGTGGTTGACTCCAAAGGGATCCAAATCCATGAAGAATAAGAGCAACTTTATTGACAGAACATTTAAGAATGGCAGAGTTTCTTTGGATACAATATACGAGGAGTCAGATGAGAGAAATAGGATGGCCCAAGGCTGTACTTGTTTGATGGTACAGTGGGCTTACCAACGACTTCCACTTCCCGGCCATTGGTTTTTTAGTCCAGTCTCAACTATCTGTGATAGTAAGCATGCTGGTCTTCAAAAATCTGATGCGCAAAGTATTGTGCAGGAACCTAGTGATTTGGTTGATGTTGCCAAGAGTGGGCTCTTCTTTATTTTAGGCGTTGAAGCCTTTTCGACCTTTCTACCTGATGGTTTACCTTCACCTGTCCTGAGTGTGCCATTGATTTGGAAATTGCATTCCTTATCTGTTGTTTTACTCACTGATATGGGAGTCTTGGATGATGAGAAGAGTAGGGATGTTTATGAGGTTTTGCAAGACCTCTATGGTCAGCGTCTTAATGAAGCTAGGTCTTGTAGACTTCCTGTACACATCATGGAGAAGGATGCAAAACATTTACTATCACAACCGGAAAATAAGAGCAATAGAGAGTTCCTAATGTTTCAATCTGAGATCCATGATAGTTACTCAACATTTATTGAAACTCTAGTGGAGCAGTTCTCCGCTGTATCCTATGGTGATGTACTATATGGGCGGCAAATTGTACTATATCTTCACCAATGCGTTGAATCTCCAACACGTCTTGCTGCCTGGAATGCTCTAAATAGTGCTTGTGTTTTTGAACTTCTTCCACCTCTTGAAAAGTGCTTTGCTGACGCTGAAGGGTATCTACAACCGATTGAGGATAATGAAGCCATTTTGGAAGCTTATGCGAAGTCATGGGTTTCAGGTGCCCTTGACAGATCTGCAATTCGAGGTTCAGTGGCCTATTTACTAGCTTTGCACCACCTCTCATCCTACATATTCCATTCTTACCCTGTCGACAACTTGTTGCTTCGGAACAAGCTCTCGAGGTCTCTTTTACGAGACTACAACCAAAAGCATCACCACAAGGATATGATGTTGGATCTTATCTTATATACCGGACCATCAACACATCGTACTACTGGACAAAAGGGTGTTGGTACAGCAATCAGAACGAGTGCCGTGGAAAAAAGGCTCGAGGTGTTGAAAGAAGCTTGTGAAAGGAATTCCTCTCTTTTGACAGTAGTCGAAGAGCTCAGTTCTTCTGCAAAAGAGAAACTGTCTGCAATGTGA 4974 41.9 MEKKTQSSRRSQPKSSARAKVFGTNALQLSEDDASRLVGGIVEKGISDADQRSPFVSFPPPAPSVLPFPVARHRSHGPVRFHLFHWESVTSKKGGDNIKDDRQEDGEEDERLMETDSIANFANPIQRKKKSSLDFGRWREAVPGHNHGAANIEEKKVPSLAKTQNLIRAGEANSDRDNRLCKPSSAHLLAPSLMNIEHSSADFVNDPTGNKTNGAGFEFARSMDNVECKGLDKQHLPENLQDVRDQWGHISESEVNEGMPLDGSSLQDMGTGVHHLNSERTPCFESNIKGEDAFSTLESQIDAENCTRIQRMTPEEIAEAQAEIMEKMNPALVKALKMRGEGKLKKGSSKPDVSSKLGNLQKESTLDRNGSPNIENGVTTVKTTLKDTKSGLQDVSVQKFDSGSSVWNAWNERVEAIRSLRFSLEGNIVESYSFQQPENGDHAVHGYSTENVASRDFLRTEGDPSAAGYTIKEAVALTRSVIPGQRVLGLHVILNLLDKALLNTHLTQVGSTMVKNSSSVDYIAVWAYTLGPEPELALSLRQCYDFQYPRSLDFFFMSMFRMCLDDNHNSVVLACAEVIQSVLSCNLNEAFFDTLEKTSTYEKDLYTAAVFRSKPEINVGFLQGGFWKYSAKPSNILPFSEDFENTEDGEKHTIQDDIVVAQQDIAAGLVRMGILPRLRYLLEAGPSVALEDCILSILVAIARHSPICAQAIMKFERLVELIIKRFTMSDKIDILSLKIKSVVLLKVLARSDRKNCIAFVESGAFQTITWHLYHYTSSIDHWVKSGKEKCKLSSTLMVEQLRLWKVCIQYGYCVSYFSDIFPALCLWLNPPNFEKLIENNVLREFTSISMEAYHVLEALARRLPNFFSEKHLDNQEPGLTGNESEIWSWSCAVPMVDLAIKWLESRSDPFISKFFESQKGIRNDFVFEGISVAPLLWVYSAVMKMLSQVVQRIIPQDIISLEGSDQTVPWIPKFIPQVGLEIIKNDFLSFADASDVKPYPSGGNSFVEDLCFLREHSEFETSLASVCCLHGLMLSIVNIDCLIQLAKSERQDYPPGDHNSSREGEILRVGMFKMSLIEQRSMLDLFTKKIALECDSLQLIETFGRGGPAPGVGIGWGVSGGGYWSPAVLLAQNDAAFLMSLIDAFQTIPTSNILTTQESLTAQSINSVLAVSLVLGPRDIGLLEKTVEFLIQAPILHNFNFYIQSFLQLNGKVKQFGWKYSEDDCLIFCRTLSSHYKDRWLTPKGSKSMKNKSNFIDRTFKNGRVSLDTIYEESDERNRMAQGCTCLMVQWAYQRLPLPGHWFFSPVSTICDSKHAGLQKSDAQSIVQEPSDLVDVAKSGLFFILGVEAFSTFLPDGLPSPVLSVPLIWKLHSLSVVLLTDMGVLDDEKSRDVYEVLQDLYGQRLNEARSCRLPVHIMEKDAKHLLSQPENKSNREFLMFQSEIHDSYSTFIETLVEQFSAVSYGDVLYGRQIVLYLHQCVESPTRLAAWNALNSACVFELLPPLEKCFADAEGYLQPIEDNEAILEAYAKSWVSGALDRSAIRGSVAYLLALHHLSSYIFHSYPVDNLLLRNKLSRSLLRDYNQKHHHKDMMLDLILYTGPSTHRTTGQKGVGTAIRTSAVEKRLEVLKEACERNSSLLTVVEELSSSAKEKLSAM 1657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22942418 22951254 + ClCG02G011090.2 Cla02g01083 267209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01083 1657 SUPERFAMILY ARM repeat 664 775 IPR016024 -
Cla02g01083 1657 MobiDBLite consensus disorder prediction 352 377 - -
Cla02g01083 1657 Pfam RPAP1-like, N-terminal 300 341 IPR013930 -
Cla02g01083 1657 MobiDBLite consensus disorder prediction 92 111 - -
Cla02g01083 1657 MobiDBLite consensus disorder prediction 92 106 - -
Cla02g01083 1657 Pfam RPAP1-like, C-terminal 419 500 IPR013929 -
Cla02g01083 1657 PANTHER TRANSCRIPTIONAL ELONGATION REGULATOR MINIYO 559 1650 - -
Cla02g01083 1657 PANTHER TRANSCRIPTIONAL ELONGATION REGULATOR MINIYO 1 545 - -
Cla02g01083 1657 MobiDBLite consensus disorder prediction 340 377 - -
Cla02g01083 1657 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01083 K20826 RPAP1; RNA polymerase II-associated protein 1 - csv:101210512 2615.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g227 . . . . . . . . . . . Cma20g00731 . Car20g00631 . . . . . . . . . . . . . . . . . Cone12ag1255 Cone8ag1310 . . . . . . . . . . . . . . . . Cmo20g00728 . . . . Cpe16g00336 . . . . . . . . Cla02g01083 Cam02g1161 Cec02g1159 Cco02g1207 Clacu02g1152 Cmu02g1114 Cre02g1418 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009191 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01083 Cla_Chr02 FPKM 1.085714 1.445871 2.562736 3.220385 3.088283 3.035925 3.752505 5.717402 2.622604 6.098172