Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01088 ATGGAGCTCCGCTTATGTCCACCGCCATACGTGATCGGAGACGGCGTTCGACTCTTCTTAAAGCCGCTTAAACGCCACGACGGCTTCCGCAGTTACCCTTTCGTGCCAAATCTGCAGGTCAAATGTACACTCACCAAACAAACCCACCGATTCCTCTCCACATTGGCCACAACCGCCGCCACCGGTGACCATTCGGCGACCAATCGCTTGATTCGAAAGTTTGTAGCGAGTTCTCCGAAATCGATAACTCTCAATGTTCTCTCCAATATCGTCTCCCCCCACACGGCTCAACCTGGGCTCTGCTCTGTTGCTCTCACGTTGTATTCTAGAATTACGGAAGCGTCTTGGTTCACATGGAATTCCAAGCTAGTTGCTGACCTTATTGCCTTCCTCGACCAAAATGGACTGTACAGTGAGTCGGAAGCCCTAATGTCCGAGACAATTTCAAAGTTAGGGTTTCAAGAAAGAAAACTTGTGAATTTCTACTCCCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATGTGGTAACTCCTATGCTCGCCTTCTTGAGCTTCTTTATAATTCGCCGTCAGTTTATGTTAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGACCTCAGGAAGCTGAGACTTTGGTAGAAAAAATGAGGAGCAAAGGAATTACGCCTTCTGCATATGAATATAGGTCCATTATTTACGCCTATGGAACATTGGGATTGTTTGAAGATATGCAGAGGAGTTTAAAACAGATGGAGAATGAAGATTATGCATTAGACACAATTTGTTCCAATATGGTGCTTTCTTCATATGGAGCTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAAGAATGAAAACTTCCGCGCATCTTAATTTCTCTGTTCGGACTTACAATTCTGTTTTGAAGTCATGTCCGAAGATTACATCAATGCTACAAGATCACAAGAGCAGCAAGTTTCCCGTTTTGATCGAAGGCTTAATCGCGGTTCTGGATGGTGATGAGGAGGCTTTGTTGGTTGAAGAGTTGGTGGTTGGTTCATCTGTTTTGAAAGAAGTAATGGTGTGGGATGCAATGGAATTGAAGTTGGATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATGTTACAGTGGATGAAGGAGATGAGACTCAACTTTGAGGATGAGAGTTGTGTGATTCCAGCACAAGTTACATTGATTTCTGGATCTGGAAACCATAGTATTGTTAGAGGAGAGTCTCCTGTAAAAGCTTTGATTAAAGAGATTATAGTTCGAACTGAAAGTCCGCTGAGAGTGGATCGAAAGAACACAGGTTGCTTCATCTCTAAAGGAAAAGCTGTAAAGAATTGGTTATGTTCACTACCAGAAAAAAGGGAGATTGTAGCTAATAGAAAATGCCATAATAGGCCTTTTACACCGTCTTAA 1461 43.05 MELRLCPPPYVIGDGVRLFLKPLKRHDGFRSYPFVPNLQVKCTLTKQTHRFLSTLATTAATGDHSATNRLIRKFVASSPKSITLNVLSNIVSPHTAQPGLCSVALTLYSRITEASWFTWNSKLVADLIAFLDQNGLYSESEALMSETISKLGFQERKLVNFYSQLVESQSKHGSERGCGNSYARLLELLYNSPSVYVKRRAYESMVTGLCSMKRPQEAETLVEKMRSKGITPSAYEYRSIIYAYGTLGLFEDMQRSLKQMENEDYALDTICSNMVLSSYGAHNKLADMVLWLQRMKTSAHLNFSVRTYNSVLKSCPKITSMLQDHKSSKFPVLIEGLIAVLDGDEEALLVEELVVGSSVLKEVMVWDAMELKLDLHGAHVGAAYVIMLQWMKEMRLNFEDESCVIPAQVTLISGSGNHSIVRGESPVKALIKEIIVRTESPLRVDRKNTGCFISKGKAVKNWLCSLPEKREIVANRKCHNRPFTPS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23085066 23086792 - ClCG02G011140.1 Cla02g01088 267214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01088 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Cla02g01088 486 ProSiteProfiles Smr domain profile. 373 457 IPR002625 -
Cla02g01088 486 Gene3D - 372 455 IPR036063 -
Cla02g01088 486 SMART SMR_2 370 457 IPR002625 -
Cla02g01088 486 SUPERFAMILY SMR domain-like 371 453 IPR036063 -
Cla02g01088 486 Gene3D Tetratricopeptide repeat domain 93 330 IPR011990 GO:0005515
Cla02g01088 486 PANTHER ATPASE EXPRESSION PROTEIN 3 37 465 - -
Cla02g01088 486 PANTHER OS02G0120000 PROTEIN 37 465 - -
Cla02g01088 486 TIGRFAM PPR: pentatricopeptide repeat domain 201 233 IPR002885 -
Cla02g01088 486 Pfam PPR repeat 201 230 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01088 - - - bhj:120089515 860.136
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla02g00428 Cla02g01088 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01088 Cla-Chr2:23085066 Cla01g02514 Cla-Chr1:38828941 6.95E-09 dispersed
Cla02g01088 Cla-Chr2:23085066 Cla02g01383 Cla-Chr2:28248026 1.96E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g162 . . . . . Bpe12g00121 . . Cmo19g00747 Cmo11g01739 Cma02g00259 Cma20g00750 . . Sed05g2217 Cpe04g00591 Cpe15g00593 Bhi05g01716 Tan02g0684 Cmetu01g2682 . Hepe02g0426 . . Cla02g00428 Cam02g0437 Cec02g0435 Cco02g0453 Clacu02g0438 Cmu02g0433 Cre02g0767 Cone12ag1231 Cone8ag1283 . . Lsi10g00496 Csa07g00098 Chy11g00253 Cme01g01263 . Blo13g00504 Bda15g01034 . Bpe15g00814 . . Bma08g00751 Sed01g0194 Cmo02g00256 Cmo20g00745 Cma11g01382 Cma19g00738 . . Cpe16g00318 Cpe05g01371 Bhi10g01847 Tan05g1133 Cmetu11g0608 . . . . Cla02g01088 Cam02g1164 Cec02g1164 Cco02g1213 Clacu02g1156 Cmu02g1118 Cre02g1421 Lsi11g01199 Csa02g01394 Chy01g00682 Cme11g00379
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011207 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01088 Cla_Chr02 FPKM 28.365582 30.212736 14.886104 14.850545 10.564253 12.263449 11.200158 29.037457 27.667131 26.673042