Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g01090 | ATGGGGCGCCGATGCTACGTCGAAGTGAAAAAATCAAGGAAGCAAAATAATGTAGCGATGTGGCACTACAGTAGATTCATGTGGTATGATTTTTCTTCAATTGCGTCGTGGCGGTGCGACAGTTTCAACCTATTACAAATACCACTGTTTCTATTGATTACAGTATCAAATCTTGGGATTTTGGAGAATCGGAATGTCCGTCCTTTGTTCGACGTCGCAAATTTAGGAACTTCTTCATTGCACAAAAAGGAGTCCAATCTAAACAATTCTTGGATGCCTAAATTAGAAAAGTTACAAACTAGACGGCCTGGTTCTTTATCTGTGGCCGAGACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGATGAGGCAAAACTTGCTCGAAGAGTTCCAGCCAAGGGATCTAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCGAATAGAGGAAGTCGGCTCTGGTTAGGTACATTTCCAACTGCCATTGATGCCGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTACGGCACTTTAGCTCGCCTGAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAGGAATCACCAACTAAGGATTCTCCTGAAATCAAGAGGTCTTCAATCTCCTTTCTAGGGTCAACTTCACTGTGTCTTAGTTCCGAATCCACAATAACATCAGATCACTCAGAGGATTGTGCAGTTGAAGATGTCTAG | 810 | 42.84 | MGRRCYVEVKKSRKQNNVAMWHYSRFMWYDFSSIASWRCDSFNLLQIPLFLLITVSNLGILENRNVRPLFDVANLGTSSLHKKESNLNNSWMPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLARRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTLARLNFPNISIPTLLKEKESPTKDSPEIKRSSISFLGSTSLCLSSESTITSDHSEDCAVEDV | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 23125164 | 23130744 | + | ClCG02G011160.2 | Cla02g01090 | 267216 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g01090 | 269 | Gene3D | AP2/ERF domain | 157 | 215 | IPR036955 | GO:0003700|GO:0006355 | |
Cla02g01090 | 269 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 214 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01090 | 269 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 97 | 239 | - | - | |
Cla02g01090 | 269 | SUPERFAMILY | DNA-binding domain | 157 | 214 | IPR016177 | GO:0003677 | |
Cla02g01090 | 269 | CDD | AP2 | 156 | 215 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01090 | 269 | SMART | rav1_2 | 157 | 220 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01090 | 269 | Pfam | AP2 domain | 156 | 206 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01090 | 269 | PRINTS | Ethylene responsive element binding protein signature | 158 | 169 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01090 | 269 | PRINTS | Ethylene responsive element binding protein signature | 180 | 196 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01090 | 269 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 97 | 239 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01090 | Cla-Chr2:23125164 | Cla11g00574 | Cla-Chr11:6486334 | 3.67E-47 | dispersed | |
Cla02g01090 | Cla-Chr2:23125164 | Cla04g00678 | Cla-Chr4:21530776 | 2.56E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60643 | PF00847 | AP2 | 9.20E-14 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g01090 | - | - | csv:101207656 | 312.383 |