Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01090 ATGGGGCGCCGATGCTACGTCGAAGTGAAAAAATCAAGGAAGCAAAATAATGTAGCGATGTGGCACTACAGTAGATTCATGTGGTATGATTTTTCTTCAATTGCGTCGTGGCGGTGCGACAGTTTCAACCTATTACAAATACCACTGTTTCTATTGATTACAGTATCAAATCTTGGGATTTTGGAGAATCGGAATGTCCGTCCTTTGTTCGACGTCGCAAATTTAGGAACTTCTTCATTGCACAAAAAGGAGTCCAATCTAAACAATTCTTGGATGCCTAAATTAGAAAAGTTACAAACTAGACGGCCTGGTTCTTTATCTGTGGCCGAGACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGATGAGGCAAAACTTGCTCGAAGAGTTCCAGCCAAGGGATCTAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCGAATAGAGGAAGTCGGCTCTGGTTAGGTACATTTCCAACTGCCATTGATGCCGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTACGGCACTTTAGCTCGCCTGAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAGGAATCACCAACTAAGGATTCTCCTGAAATCAAGAGGTCTTCAATCTCCTTTCTAGGGTCAACTTCACTGTGTCTTAGTTCCGAATCCACAATAACATCAGATCACTCAGAGGATTGTGCAGTTGAAGATGTCTAG 810 42.84 MGRRCYVEVKKSRKQNNVAMWHYSRFMWYDFSSIASWRCDSFNLLQIPLFLLITVSNLGILENRNVRPLFDVANLGTSSLHKKESNLNNSWMPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLARRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTLARLNFPNISIPTLLKEKESPTKDSPEIKRSSISFLGSTSLCLSSESTITSDHSEDCAVEDV 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23125164 23130744 + ClCG02G011160.2 Cla02g01090 267216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01090 269 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Cla02g01090 269 ProSiteProfiles AP2/ERF domain profile. 157 214 IPR001471 GO:0003700|GO:0006355
Cla02g01090 269 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 97 239 - -
Cla02g01090 269 SUPERFAMILY DNA-binding domain 157 214 IPR016177 GO:0003677
Cla02g01090 269 CDD AP2 156 215 IPR001471 GO:0003700|GO:0006355
Cla02g01090 269 SMART rav1_2 157 220 IPR001471 GO:0003700|GO:0006355
Cla02g01090 269 Pfam AP2 domain 156 206 IPR001471 GO:0003700|GO:0006355
Cla02g01090 269 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Cla02g01090 269 PRINTS Ethylene responsive element binding protein signature 180 196 IPR001471 GO:0003700|GO:0006355
Cla02g01090 269 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 97 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01090 Cla-Chr2:23125164 Cla11g00574 Cla-Chr11:6486334 3.67E-47 dispersed
Cla02g01090 Cla-Chr2:23125164 Cla04g00678 Cla-Chr4:21530776 2.56E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60643 PF00847 AP2 9.20E-14 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01090 - - csv:101207656 312.383