Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g01113 | ATGGATCAACTAATTCAACGCGACGATCTTGTTCAGAATCCGGCCACACCCTCCACCTCCATTGTACCATGCATTGAACTTCCAGGCCACCCAATTCGTTCTCAATCCAACTCCAAGTCTGTACAAGTATCCGCCATTTCAATCTGGTTTTGTTTTCCGGTGTTATTAATTCCTTGTTTAAGAACGATTTTGTTTCTCTGTGAAACTATGGCAATGGCTTTTATTCCGAAAATTTGGACTTTAGAGGAAAACTTACTGGCTTCGTATGGATTATATGTTTTCCGCTGCCAAAGGTTTGATGGGGAATTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAACGAACAATTTGTCGAGCTGGGAAATATTTTAGATCCCGATAGGCCCAAAAATGACAAAGCAACGATTTTAATGGATACAATTCAATTGCTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAACTGAACATGCTACTTTGATAGAAGAATCACACGAGCTAGCCCAGGAAAAGAGTGATCTGAGAGAAGAGAAGCCGTTGCTTACATCTGATATTGAGAATCTTAATGCTCAGTATCAGCAGAAACTCAGGGCTACATACCCTTGGGCTGTCATGGATCACTCGGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCAGTGCCAATGCAAATGCCTCCAGGGCCATTTCCCTTGCATCCATCCTTGCAACCTTATACATTCTTTGGAAATCCGGATCCCAGGGTAATTGCAAACCCTTGTTCCACCTTCGTCCCATACATACCTCCAAATTCCTTGACCGAGCAACAGTCCCCCCAAAATGCACCACCTTTCATTCAGTCAGGCAATCGGTCTGATAACTTCAGTGAGCAAAATTCCAGGAGCAAGTTCTCAGTTGAAAGCAAGATTGAGAAAAGTGTAGATTCCAATGAAGTTGCAACTTACCTGGAGTTGAAAACTCCTGGATCTTCCTCAGATCAGGATTCATCGTTTGAATGTTCAAACGGTAAGAACAGAAAGGAAAATAATCTATCAGAAGAGAGTTCGTCAAGTAGATGTTCTTCATCTTGTAGTTTAGGGGATAATTCGTCTAGTAGCACGCCAAATGGACGAAAATCTACTGATATATGTGGAAACCCATAA | 1179 | 42.32 | MDQLIQRDDLVQNPATPSTSIVPCIELPGHPIRSQSNSKSVQVSAISIWFCFPVLLIPCLRTILFLCETMAMAFIPKIWTLEENLLASYGLYVFRCQRFDGEFKDSAAARKVQKADREKLRRGRLNEQFVELGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEHATLIEESHELAQEKSDLREEKPLLTSDIENLNAQYQQKLRATYPWAVMDHSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFFGNPDPRVIANPCSTFVPYIPPNSLTEQQSPQNAPPFIQSGNRSDNFSEQNSRSKFSVESKIEKSVDSNEVATYLELKTPGSSSDQDSSFECSNGKNRKENNLSEESSSSRCSSSCSLGDNSSSSTPNGRKSTDICGNP | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 23899468 | 23902878 | + | ClCG02G011390.2 | Cla02g01113 | 267239 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g01113 | 392 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 108 | 173 | IPR036638 | GO:0046983 | |
Cla02g01113 | 392 | MobiDBLite | consensus disorder prediction | 330 | 344 | - | - | |
Cla02g01113 | 392 | Pfam | Helix-loop-helix DNA-binding domain | 110 | 159 | IPR011598 | GO:0046983 | |
Cla02g01113 | 392 | MobiDBLite | consensus disorder prediction | 274 | 308 | - | - | |
Cla02g01113 | 392 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 97 | 385 | - | - | |
Cla02g01113 | 392 | SMART | finulus | 115 | 165 | IPR011598 | GO:0046983 | |
Cla02g01113 | 392 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 97 | 385 | IPR044579 | GO:0003700|GO:0055072 | |
Cla02g01113 | 392 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 109 | 159 | IPR011598 | GO:0046983 | |
Cla02g01113 | 392 | MobiDBLite | consensus disorder prediction | 359 | 392 | - | - | |
Cla02g01113 | 392 | MobiDBLite | consensus disorder prediction | 330 | 392 | - | - | |
Cla02g01113 | 392 | Coils | Coil | 149 | 204 | - | - | |
Cla02g01113 | 392 | Gene3D | - | 108 | 192 | IPR036638 | GO:0046983 | |
Cla02g01113 | 392 | CDD | bHLH_AtILR3_like | 114 | 188 | - | - | |
Cla02g01113 | 392 | MobiDBLite | consensus disorder prediction | 274 | 316 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01980 | Cla-Chr1:34450499 | Cla02g01113 | Cla-Chr2:23899468 | 1.94E-89 | dispersed | |
Cla02g01113 | Cla-Chr2:23899468 | Cla06g01597 | Cla-Chr6:29512829 | 5.44E-19 | dispersed | |
Cla02g01113 | Cla-Chr2:23899468 | Cla05g01539 | Cla-Chr5:25681619 | 4.88E-16 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60645 | PF00010 | HLH | 1.60E-07 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g01113 | - | - | csv:101213608 | 463.766 |