Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01113 ATGGATCAACTAATTCAACGCGACGATCTTGTTCAGAATCCGGCCACACCCTCCACCTCCATTGTACCATGCATTGAACTTCCAGGCCACCCAATTCGTTCTCAATCCAACTCCAAGTCTGTACAAGTATCCGCCATTTCAATCTGGTTTTGTTTTCCGGTGTTATTAATTCCTTGTTTAAGAACGATTTTGTTTCTCTGTGAAACTATGGCAATGGCTTTTATTCCGAAAATTTGGACTTTAGAGGAAAACTTACTGGCTTCGTATGGATTATATGTTTTCCGCTGCCAAAGGTTTGATGGGGAATTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAACGAACAATTTGTCGAGCTGGGAAATATTTTAGATCCCGATAGGCCCAAAAATGACAAAGCAACGATTTTAATGGATACAATTCAATTGCTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAACTGAACATGCTACTTTGATAGAAGAATCACACGAGCTAGCCCAGGAAAAGAGTGATCTGAGAGAAGAGAAGCCGTTGCTTACATCTGATATTGAGAATCTTAATGCTCAGTATCAGCAGAAACTCAGGGCTACATACCCTTGGGCTGTCATGGATCACTCGGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCAGTGCCAATGCAAATGCCTCCAGGGCCATTTCCCTTGCATCCATCCTTGCAACCTTATACATTCTTTGGAAATCCGGATCCCAGGGTAATTGCAAACCCTTGTTCCACCTTCGTCCCATACATACCTCCAAATTCCTTGACCGAGCAACAGTCCCCCCAAAATGCACCACCTTTCATTCAGTCAGGCAATCGGTCTGATAACTTCAGTGAGCAAAATTCCAGGAGCAAGTTCTCAGTTGAAAGCAAGATTGAGAAAAGTGTAGATTCCAATGAAGTTGCAACTTACCTGGAGTTGAAAACTCCTGGATCTTCCTCAGATCAGGATTCATCGTTTGAATGTTCAAACGGTAAGAACAGAAAGGAAAATAATCTATCAGAAGAGAGTTCGTCAAGTAGATGTTCTTCATCTTGTAGTTTAGGGGATAATTCGTCTAGTAGCACGCCAAATGGACGAAAATCTACTGATATATGTGGAAACCCATAA 1179 42.32 MDQLIQRDDLVQNPATPSTSIVPCIELPGHPIRSQSNSKSVQVSAISIWFCFPVLLIPCLRTILFLCETMAMAFIPKIWTLEENLLASYGLYVFRCQRFDGEFKDSAAARKVQKADREKLRRGRLNEQFVELGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEHATLIEESHELAQEKSDLREEKPLLTSDIENLNAQYQQKLRATYPWAVMDHSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFFGNPDPRVIANPCSTFVPYIPPNSLTEQQSPQNAPPFIQSGNRSDNFSEQNSRSKFSVESKIEKSVDSNEVATYLELKTPGSSSDQDSSFECSNGKNRKENNLSEESSSSRCSSSCSLGDNSSSSTPNGRKSTDICGNP 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23899468 23902878 + ClCG02G011390.2 Cla02g01113 267239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01113 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 173 IPR036638 GO:0046983
Cla02g01113 392 MobiDBLite consensus disorder prediction 330 344 - -
Cla02g01113 392 Pfam Helix-loop-helix DNA-binding domain 110 159 IPR011598 GO:0046983
Cla02g01113 392 MobiDBLite consensus disorder prediction 274 308 - -
Cla02g01113 392 PANTHER TRANSCRIPTION FACTOR BHLH121 97 385 - -
Cla02g01113 392 SMART finulus 115 165 IPR011598 GO:0046983
Cla02g01113 392 PANTHER TRANSCRIPTION FACTOR BHLH121 97 385 IPR044579 GO:0003700|GO:0055072
Cla02g01113 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 159 IPR011598 GO:0046983
Cla02g01113 392 MobiDBLite consensus disorder prediction 359 392 - -
Cla02g01113 392 MobiDBLite consensus disorder prediction 330 392 - -
Cla02g01113 392 Coils Coil 149 204 - -
Cla02g01113 392 Gene3D - 108 192 IPR036638 GO:0046983
Cla02g01113 392 CDD bHLH_AtILR3_like 114 188 - -
Cla02g01113 392 MobiDBLite consensus disorder prediction 274 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01980 Cla-Chr1:34450499 Cla02g01113 Cla-Chr2:23899468 1.94E-89 dispersed
Cla02g01113 Cla-Chr2:23899468 Cla06g01597 Cla-Chr6:29512829 5.44E-19 dispersed
Cla02g01113 Cla-Chr2:23899468 Cla05g01539 Cla-Chr5:25681619 4.88E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60645 PF00010 HLH 1.60E-07 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01113 - - csv:101213608 463.766