Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla02g01138 | ATGGCGGCAACTGTCTCACCGTGGGGCAAGCCCGGAGCTTGGGCTTTGGATGCGGAGGAGCACGAGGCGGAGCTTCTCAAGGACCAGCAGGACCAGTCTCGCCAGGAATCGGAGCCCAGTGCCGACTTTCCATCTCTCGCCGCCGCGGCCGCCACCAAACCTAAGAAGAAGAAAGGTCAGTCCATTCCCTTGTCGGAGTTTCAGACCTATGGCGGTCCAAAGCCGTCCTCTCAATCCAGTGATCCAAAGGGTCTGACGGCTGAAGATCTAATGATGCTTCCGACGGGTCCGCGTCAGAGAACGGCGGAGGAGATGGACCGCAACCGTCTTGGTGGAGGCTTCAAGAGTTGGGGTCAGAATAGTTTGTACGACAGGGGGAATCGGTATTCTAACGCGGAAGATTCACCGAATTCCCGACGGGGTTCTAGGGTTTTTGATGAGTCAAGGAGGAGCAATGATGGATCTGATAGAGAATTCAGAAGGGAATCGTTGCCTTCTAGGGCTGATGAGATTGATGATTGGGGAGCCGGGAAGAAGCCTATGATGGGTAATGGGATTGAGAGGAGAGAGAGAGGAGGAGGAGGAGGTTTTTTCGATTCGCACTCGTCGAAAGCCGACGAATCGGATAGTTGGGTATCGAGTAAGAGCTTTACACCTTCTGAAGGTCGGAGATCAGGCGGTATGGGTGGTGGTTTTGACAGAGAGCGAAGAGGAGGATTTCCCTCGAGCGGTGGTGGCGCCGATTCAGACAGTTGGAGCAGAAAATCTGAAGGGGCTAGAGGTGGAATTGGTGAGAACGGTGGTGGGGCAGATTCGGAAAATTGGGGCAAAAAATCTGAAGGGGTTAGAGGTGGAATTGGTGAGAGGCCGAGGCTTAATCTGCAGCCTCGTTCAATCCCTTTGAACAATGGGAATCAGGAGGCTTCTGGTGCTGCAGCAAAGCCAAAGGGTTCCAATCCTTTTGGGAATGCAAGACCAAGGGAACAGGTATTGGCTGAAAAGGGGCAAGACTGGAAGAAGATTGATGAGCAACTCGAATCAATGAAAATTAAGGATACGGTGGAGAGAACCGAGAAATCTAGTGGGGCTTCGTTTGAGAGAAAAGGCTTTGGAGTTAGAAGTGGTCGGTCTCCCGAAGATCGGTCAGTAAGGAGTTGGAGGAAGCCAGAGTCTGTGGAGTCTCGTCCCCAAAGTGCTGACGTGGTTGAAGATGGACCTGCTGAGGATTGA | 1230 | 52.76 | MAATVSPWGKPGAWALDAEEHEAELLKDQQDQSRQESEPSADFPSLAAAAATKPKKKKGQSIPLSEFQTYGGPKPSSQSSDPKGLTAEDLMMLPTGPRQRTAEEMDRNRLGGGFKSWGQNSLYDRGNRYSNAEDSPNSRRGSRVFDESRRSNDGSDREFRRESLPSRADEIDDWGAGKKPMMGNGIERRERGGGGGFFDSHSSKADESDSWVSSKSFTPSEGRRSGGMGGGFDRERRGGFPSSGGGADSDSWSRKSEGARGGIGENGGGADSENWGKKSEGVRGGIGERPRLNLQPRSIPLNNGNQEASGAAAKPKGSNPFGNARPREQVLAEKGQDWKKIDEQLESMKIKDTVERTEKSSGASFERKGFGVRSGRSPEDRSVRSWRKPESVESRPQSADVVEDGPAED | 409 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 24544299 | 24546472 | + | ClCG02G011610.1 | Cla02g01138 | 267264 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla02g01138 | 409 | Pfam | Plant specific eukaryotic initiation factor 4B | 7 | 255 | IPR010433 | GO:0003743 | |
| Cla02g01138 | 409 | Pfam | Plant specific eukaryotic initiation factor 4B | 225 | 361 | IPR010433 | GO:0003743 | |
| Cla02g01138 | 409 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 1 | 394 | IPR010433 | GO:0003743 | |
| Cla02g01138 | 409 | MobiDBLite | consensus disorder prediction | 1 | 409 | - | - | |
| Cla02g01138 | 409 | MobiDBLite | consensus disorder prediction | 372 | 394 | - | - | |
| Cla02g01138 | 409 | MobiDBLite | consensus disorder prediction | 15 | 35 | - | - | |
| Cla02g01138 | 409 | MobiDBLite | consensus disorder prediction | 62 | 84 | - | - | |
| Cla02g01138 | 409 | MobiDBLite | consensus disorder prediction | 330 | 363 | - | - | |
| Cla02g01138 | 409 | Coils | Coil | 16 | 36 | - | - | |
| Cla02g01138 | 409 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 | 1 | 394 | - | - | |
| Cla02g01138 | 409 | MobiDBLite | consensus disorder prediction | 139 | 176 | - | - | |
| Cla02g01138 | 409 | MobiDBLite | consensus disorder prediction | 120 | 138 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla02g00442 | Cla02g01138 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01138 | Cla-Chr2:24544299 | Cla08g01723 | Cla-Chr8:29773372 | 1.86E-28 | dispersed | |
| Cla03g00488 | Cla-Chr3:5396001 | Cla02g01138 | Cla-Chr2:24544299 | 7.88E-06 | transposed | |
| Cla02g00442 | Cla-Chr2:4358727 | Cla02g01138 | Cla-Chr2:24544299 | 9.38E-122 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla02g01138 | - | - | csv:101214573 | 679.478 |