Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01139 ATGGATCCTCTCCCAAAGCTCAACCTCTGTTTTTTAGCTGCATCTCTTCTTTTGGCCACTGCCCATGGATACGCTGTCGTCACGGGCACCGTCTTTTGCGATCAATGCAAAGATGGCCAAATATCCATGTTCGATTATCCCATGAACGGAGTTAAAGTGATGGTGGCCTGTGGAGATGGCAATGGGGGAGTTACTTATTTGAGAGAGGAGACTACAAATTTGTTTGGAAGCTTCACAATGAGATTCGATGGAACACCGGACCTTAGCGGTTGTTATGCGACGGTTGGTGGAAGTGTAGAGGGAACGACGACAGAGTGTGGTGGAGCTGGCGGTCCGCCGAAGAGTCTTAGGTTGATGTTTAGGTTGTTTGACATGGAAATGTATGTGGTTGATTCCTTGGTTTCTCAACCTGCTAAACCAATGTCGTTCTGTTCGGCATCGGTTAATCCGGTCCCAGTCCCTGCGCCAGTTGTAACGGCGCCACCGTCTCCATCTCTGCCGTTGTCTCCGCCTCCTCTGCCTCCTTCGTTTAAGCTTCCGCCACTTCCGCCGCTGCCTCAGCTGCCGCCTGGGCCATTCTTGGAAGCTTCTGCTTGCCAACATGAGAATTGGACAAACCCAGATTACAGATGCTATTGGAGGGTAGTGAACCCAGACACAAAAGTAGCCGTTATTTTTGGACTAGGAGCGGCCAACCGATACGGAACGGACCTGACCCTATGGAACGGCCTACAAGGTCGAGGGGACCCTTATAGGACCCTTTTAAGGGAAGCCATAACGGCGTTCCTTAATTCCTACAATTCCGTTAATTTTCCCTACCCTACACTTTCTGTGATCCAACGACTTAATTGGGCCTTATTGGGCTCTCCACGGGCCGTCCTCCTCACTGCCCTTCGTTTCAAACGGGCCAACTCTGGCTATGGCCACGTCACCTGCAAATTCGATCCTTGCCAATAA 957 50.89 MDPLPKLNLCFLAASLLLATAHGYAVVTGTVFCDQCKDGQISMFDYPMNGVKVMVACGDGNGGVTYLREETTNLFGSFTMRFDGTPDLSGCYATVGGSVEGTTTECGGAGGPPKSLRLMFRLFDMEMYVVDSLVSQPAKPMSFCSASVNPVPVPAPVVTAPPSPSLPLSPPPLPPSFKLPPLPPLPQLPPGPFLEASACQHENWTNPDYRCYWRVVNPDTKVAVIFGLGAANRYGTDLTLWNGLQGRGDPYRTLLREAITAFLNSYNSVNFPYPTLSVIQRLNWALLGSPRAVLLTALRFKRANSGYGHVTCKFDPCQ 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24554364 24556762 + ClCG02G011620.1 Cla02g01139 267265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01139 318 PANTHER OS05G0346700 PROTEIN 9 316 - -
Cla02g01139 318 Pfam Pollen protein Ole e 1 like 27 95 - -
Cla02g01139 318 PANTHER PROTODERMAL FACTOR 1 9 316 IPR039923 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01139 - - - mcha:111015504 456.447
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g121 . . . . . . . . . . . Cma20g00765 . Car20g00669 . . . . . . . . . . . . . . . . . . Cone8ag1269 . . . . Chy11g00287 . . . . . . . . . Sed01g0216 . Cmo20g00762 . . . . Cpe16g00302 . Bhi10g01882 Tan05g1180 Cmetu11g1766 . Hepe08g0268 . . Cla02g01139 Cam02g1215 Cec02g1223 Cco02g1267 Clacu02g1197 Cmu02g1166 Cre02g1473 . Csa02g01362 . Cme11g00410
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013841 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01139 Cla_Chr02 FPKM 29.594645 30.561653 38.200348 36.803219 25.63488 25.327656 24.729422 49.273319 53.726093 49.835075