Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01140 ATGAAGGAACTTCAACGGCCTCTACCGGCGTTAATCTCGCTATTGATCGTCGTCAGCAGCGGCGCAATAAGCCAAATCAATGGACAGGATTTCACGATTGAAGAAGCAACAATCGAGGAAATCCAGAGAGCTTTTGCCGACCAAAGGCTCACATCGAGAATACTAGTGGATTTCTACTTGAAACAAATCGAAGCCCTAAATCCGATGCTTAGGAGCGTGGTGGAGGTGAATCCGGAGGCGAGGGATGAGGCGGACGAGGCGGACCGACGGCGGAGAGAGGCGAATGAGAAACGGTTGCCGGTCGGAGGCCTCGACGGCGTCCCGGTGCTGTTGAAGGACACTATTGCGACGAAGGACAAGATGAACACGACGGCTGGATCCTACGCATTGGTCGGATCGGTGGTGCCTCGGGACGCCGGCGTCGTCGAGAGGCTGAGAAAAGCTGGGGCGGTGATTTTGGGGAAAGCGAGTCTCAGCGAGTGGTACTCGTTCCGGGCTTTGGGTCACATGCCCAATGGATGGTGCGCACGTGCCGCGTTTCAAAAACCATGCAAAAACTGTAATAGGAGCCAAAATGGTGTTTGTGAAACCACGCAGAATCCGTATGTGGCATCTGGTGGGACTTGTGGGTCAAGTAGTGGCTCTGCCATTTGTGTTGCTGCTAACATGGTGACCGTCTCACTCGGCACTGAAACTCATGGCTCCATCCTCTGCCCCTCCGATCACAACTCCGTCGTTGGATTCAAACCCACTGTCGGCCTCACTACCCGAGCAGGAGTCATTCCCATCATGTCTCGCCACGACACCGTCGGGCCTATAGCCAGGACAGTGTCGGATGCAGTTTATGTGCTTGATGCGATTGTTGGTTTTGATCCGAGAGATGCTGAGGCCACAAGCCAAGCCTCCAAATTTATACCTCAAGGTGGATATAAACAATTTTTAAATCCCGATGGATCCAATGGAAAAAGAATAGGGGTTGTTAGAACCCCATTTGCTGATGAGTTCCATTCAATGCAAGTTTTTGAGAATCATCTTCATACCTTAAGTCCCAAAAGGAGTGGTGAACTAACAGTTATGTTGGCTGATTTCAAGCTGTTGCTAAATGATTACTTGAAAGAGCTCATCACTTCTCCAGTCAGATCACTTGCAGATGTTATTGCCTTCAACAATAAGCATCCTCAATTGGAGAAACTCAAAGAATATGGACAAGCCACTTTCATTCAATCAGAGAAAACAGATGGGTTTGGGGAGAAAGAAAAGAAGGCAATGGAAACAATGGCGAATTTATCGCGAAACGGATTCGAGAAGTTAATGAGAGAAAATGAGTTGGACGCGATCATTACACCGGGATCCGGCTGCGTTTCGGTGCTGGCGATCGGAGGATACCCTGGAATTACTGTGCCTGCAGGATATGGTAAAGACGATGGTATGCCATTTGGGATCTGTTTTGGAGGGTTGAAAGGCACAGAGCCAAAGCTGATTGAGATTGCTTATGCTTTTGAGCAAGCCACTATGATGCGAAGGCCTCCATTTTCAAATTCAATGGGTTATCAATTTGAAGGAAGAAAAATATTTAGCTTTGACACTGGCTTCTCCATTGAAGAAGCAACTTTGAAAGATCTCCAACTTGCTTTGTACAAAAACAAACTCACCTCCAGGCAACTTGTCAAGTTTTACCTCAAACAAGTGCGTAGATTTAACCCCATCCTGAAAGGGATCATAGAAGTGAATCCAGATGCTTTAGACCAAGCCTCTCAAGCCGATCTCGAGCGCAAGAGAAATTCGCCGAGCTCTTCGTCTCCACTGCATGGCATTCCTGTACTTCTAAAAGATAACATTGCAACCAGGGATAAGCTCAACACAACGGCTGGGTCCTTTGCTCTGCTTGGCTCTGTTGTTCCTCGTGATGCAGGGGTGGTGACCAAGTTGAGGAAGGCAGGTGCAATTATCTTTGGGAAAGCGAGCCTGAGCGAGTGGTCTGATTTCAGGTCCTATGAACCCCCCAATGGTTGGAGCGCCAGGGGTGGCCAAGGGAAGAATCCTTACACATTGGGAGAACCTTGTGGCTCGAGTAGCGGCTCTGCCATATCCGTTGCAGCAAATATGGTTGCAGTTTCACTGGGAACCGAAACTGATGGATCAATATTATGCCCTTCTACTTTCAATTCAGTAGTTGGCATTAAACCCACAGTAGGTCTCACCAGTCGAGCAGGGGTCGTTCCGATTTCTTTGAGGCAGGACACTGTCGGAACAGTATCAGATGCTGCTTATGTTCTAGGTGCCATTGTAGGAGGGGACAGATATGATAATTCAACAATCGAAGCATCAAAGTACATTCCAAAAGATGGATATGGCCAATTTCTAAGGGTTGATAGGCTGAAAGGAAAAAGAATAGGAATCGTGAGGGAATTCTTTGATTTTGGTCATGATGATGCCTTCTACCCTGGAGCTTTTGAGAAAGTTTTCAAAGCCCTGGAGCAAGGAGGAGCAATATTGGTGGACAATCTGACGATAGAGAACCTACATGTAATCATTGGCGGTTTAAGTGGAGAGTGGACTGCATTGCCTGCCGAATTCAAAATATCCTTAAATGCATACCTCAAAGAGCTAGTTGCTTCTCCAATTCGATCCTTGTCAGATGCAATAGAATTCAACAAAAAAAACTCAAAACTTGAAAAGCTAAAGGAGTACGGTCAGGAGTTATTTCTAAAAGCAGAAGCCACAAAAGGAATCGGAGTTGCAGAAAAGGCAGCATTAACCAGATTAGCAACACTGTCAAAAAATGGATTTGAGCAAGTAATGATTAAGAATAAGCTTGATGCAATAGCGGCTCCTGGTTGGGCAATCTCTCCTATTCTTGCAATTGGAGGTTTTCCTGGAGTTAGTGTACCAGCTGGATATAACCCTCAAGGGGTTCCCTATGGCATCGGCTTTGGAGGATTAAAAGGGTTCGAGCCAAGGCTGATAGAGATTGCATATGGATTTGAGCATTTGACTAAGAGTAGAAAGTCTCCTTCAATGAAGAGACGTTAA 3033 46.69 MKELQRPLPALISLLIVVSSGAISQINGQDFTIEEATIEEIQRAFADQRLTSRILVDFYLKQIEALNPMLRSVVEVNPEARDEADEADRRRREANEKRLPVGGLDGVPVLLKDTIATKDKMNTTAGSYALVGSVVPRDAGVVERLRKAGAVILGKASLSEWYSFRALGHMPNGWCARAAFQKPCKNCNRSQNGVCETTQNPYVASGGTCGSSSGSAICVAANMVTVSLGTETHGSILCPSDHNSVVGFKPTVGLTTRAGVIPIMSRHDTVGPIARTVSDAVYVLDAIVGFDPRDAEATSQASKFIPQGGYKQFLNPDGSNGKRIGVVRTPFADEFHSMQVFENHLHTLSPKRSGELTVMLADFKLLLNDYLKELITSPVRSLADVIAFNNKHPQLEKLKEYGQATFIQSEKTDGFGEKEKKAMETMANLSRNGFEKLMRENELDAIITPGSGCVSVLAIGGYPGITVPAGYGKDDGMPFGICFGGLKGTEPKLIEIAYAFEQATMMRRPPFSNSMGYQFEGRKIFSFDTGFSIEEATLKDLQLALYKNKLTSRQLVKFYLKQVRRFNPILKGIIEVNPDALDQASQADLERKRNSPSSSSPLHGIPVLLKDNIATRDKLNTTAGSFALLGSVVPRDAGVVTKLRKAGAIIFGKASLSEWSDFRSYEPPNGWSARGGQGKNPYTLGEPCGSSSGSAISVAANMVAVSLGTETDGSILCPSTFNSVVGIKPTVGLTSRAGVVPISLRQDTVGTVSDAAYVLGAIVGGDRYDNSTIEASKYIPKDGYGQFLRVDRLKGKRIGIVREFFDFGHDDAFYPGAFEKVFKALEQGGAILVDNLTIENLHVIIGGLSGEWTALPAEFKISLNAYLKELVASPIRSLSDAIEFNKKNSKLEKLKEYGQELFLKAEATKGIGVAEKAALTRLATLSKNGFEQVMIKNKLDAIAAPGWAISPILAIGGFPGVSVPAGYNPQGVPYGIGFGGLKGFEPRLIEIAYGFEHLTKSRKSPSMKRR 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24559273 24573942 + ClCG02G011630.1 Cla02g01140 267266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01140 1010 Coils Coil 77 97 - -
Cla02g01140 1010 Pfam Amidase 55 451 IPR023631 -
Cla02g01140 1010 Pfam Amidase 555 951 IPR023631 -
Cla02g01140 1010 Gene3D Amidase signature (AS) domain 522 1007 IPR036928 -
Cla02g01140 1010 Gene3D Amidase signature (AS) domain 17 511 IPR036928 -
Cla02g01140 1010 SUPERFAMILY Amidase signature (AS) enzymes 532 1005 IPR036928 -
Cla02g01140 1010 SUPERFAMILY Amidase signature (AS) enzymes 33 510 IPR036928 -
Cla02g01140 1010 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 523 1008 - -
Cla02g01140 1010 MobiDBLite consensus disorder prediction 78 98 - -
Cla02g01140 1010 PANTHER AMIDASE 523 1008 - -
Cla02g01140 1010 PANTHER AMIDASE 16 511 - -
Cla02g01140 1010 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 16 511 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01140 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - csv:101205119 834.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00441 Cla-Chr2:4351416 Cla02g01140 Cla-Chr2:24559273 0 dispersed
Cla02g01140 Cla-Chr2:24559273 Cla09g01610 Cla-Chr9:32250671 1.54E-18 dispersed
Cla04g00191 Cla-Chr4:6233773 Cla02g01140 Cla-Chr2:24559273 2.52E-20 transposed
Cla09g02164 Cla-Chr9:39291240 Cla02g01140 Cla-Chr2:24559273 3.98E-25 transposed
Cla10g00342 Cla-Chr10:4487236 Cla02g01140 Cla-Chr2:24559273 7.92E-19 transposed
Cla02g00440 Cla-Chr2:4338495 Cla02g01140 Cla-Chr2:24559273 4.98E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g123 . . . . . . . . Cmo19g00736 Cmo11g01729 . . . . . . Cpe15g00582 . . . . . . . . . . . . . . Cone12ag1217 Cone8ag1270 . . . Csa07g00085 Chy11g00286 . Blo04g00557 . . . . . Bma03g00597 . . . . . . . Car19g00556 . . Bhi10g01881 Tan05g1178 . . Hepe08g0269 . . Cla02g01140 Cam02g1217 Cec02g1224 Cco02g1270 Clacu02g1199 Cmu02g1168 Cre02g1475 . Csa02g01363 . Cme11g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01140 Cla_Chr02 FPKM 76.717781 83.731865 48.302311 49.89394 38.800453 35.986141 39.150112 34.207142 30.80752 33.776066