Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01148 ATGGCTTCCTCTTTTCTCACTTCCTTCACCCACTCCTCTCACCGGCCAACCGCCGCCTGCCCCTCCGTTCAGAGGCCGAATCCGGCGGTGGTAGCCTCAGCGGCCGGGCTGCGATTCGGGCGCGAGTTATCGGTTGGGCGTTCCTCGTTTTACGAGGTGCTTGGGATTCCGATGACAGCTTCTTGCCGGGAAATCAAGGCGGCTTACCGCAAACTAGCGAGAACTTGTCATCCAGACGTGGTGGCGGAGAATTCGGCGGAGGAGTTTATTAAGATTCAGGCGGCGTATTTGACATTGTCGGATCCGGATAAAAGGGCGGATTACGACAGGGAGATTTACAAAGCTCAATTGGTTTCGGTTTCGGTTTCGGGTTTGTCGTCTCGGACGGGGGTTTCGAGTTATTCCGGTTACTGTACACGGCGGAATTGGGAATCCGATCAATGTTGGTAA 450 54.89 MASSFLTSFTHSSHRPTAACPSVQRPNPAVVASAAGLRFGRELSVGRSSFYEVLGIPMTASCREIKAAYRKLARTCHPDVVAENSAEEFIKIQAAYLTLSDPDKRADYDREIYKAQLVSVSVSGLSSRTGVSSYSGYCTRRNWESDQCW 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24732202 24732651 + ClCG02G011710.1 Cla02g01148 267274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01148 149 MobiDBLite consensus disorder prediction 1 24 - -
Cla02g01148 149 PRINTS DnaJ domain signature 51 69 IPR001623 -
Cla02g01148 149 PRINTS DnaJ domain signature 84 104 IPR001623 -
Cla02g01148 149 SMART dnaj_3 48 104 IPR001623 -
Cla02g01148 149 Gene3D DnaJ domain 36 123 IPR036869 -
Cla02g01148 149 MobiDBLite consensus disorder prediction 1 20 - -
Cla02g01148 149 Pfam DnaJ domain 50 109 IPR001623 -
Cla02g01148 149 CDD DnaJ 50 101 IPR001623 -
Cla02g01148 149 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 41 149 - -
Cla02g01148 149 ProSiteProfiles dnaJ domain profile. 49 112 IPR001623 -
Cla02g01148 149 SUPERFAMILY Chaperone J-domain 47 116 IPR036869 -
Cla02g01148 149 PANTHER DNAJ PROTEIN HOMOLOG-LIKE 41 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01148 - - - cmo:103497311 219.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01983 Cla-Chr1:34477010 Cla02g01148 Cla-Chr2:24732202 2.32E-32 dispersed
Cla02g01148 Cla-Chr2:24732202 Cla05g00330 Cla-Chr5:2998549 2.93E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01148 Cla_Chr02 FPKM 7.421094 8.557647 1.822759 1.23243 46.287502 41.325947 42.76474 6.108608 5.320289 4.779893