Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01159 ATGGCGATGGCTTTCAAGATGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAATTCCTTCATGGAGATGAAATGGAAGAAGGTTCATAGGTATATTGTGTTTAAGATCGATGAAGGATCCAGATTAGTCACCGTCGACAAGGTCGGCGGTCCGGCCGAAAGCTACGATGATCTCACCGCCTCATTGCCGAACGACGACTGTCGATACGCGGTCTTCGATTTCGACTTCGTTACTGTTGATAATTGCCGGAAGAGCAAGATCTTCTTCATCGCCTGGTATCTTCCGCGATTCTTTGCTGTTTTTCCTCGATCGCATCTGCTCTTCATTCCTAGAATAATCTGTCTGATTAATTATATGAGTTCTGATCGTAAGCGGAATTCGAATTTGTCTAGAGAAACCCTAACCGATTATTTGAATCGAATACTGTCGCCCACCGAATCAAGAATCAGAGCTAAAATTCTATACGCGACTTCAAAGGATGGGCTGAGGAGAGTGCTGGAAGGAATTCATTACGAAGTTCAAGCAACGGATCCAACTGAGATGGGGATCGATGTGATCAAGGACAGAGCCAAATAA 582 45.19 MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINYMSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDPTEMGIDVIKDRAK 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24960407 24961386 + ClCG02G011820.1 Cla02g01159 267285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01159 193 PANTHER COFILIN-RELATED 5 94 IPR017904 GO:0015629|GO:0030042
Cla02g01159 193 SUPERFAMILY Actin depolymerizing proteins 145 191 - -
Cla02g01159 193 PANTHER ACTIN DEPOLYMERIZING FACTOR 5-RELATED 5 94 - -
Cla02g01159 193 Gene3D Severin 2 193 IPR029006 -
Cla02g01159 193 SUPERFAMILY Actin depolymerizing proteins 6 95 - -
Cla02g01159 193 CDD ADF_cofilin_like 10 192 IPR017904 GO:0015629|GO:0030042
Cla02g01159 193 PANTHER ACTIN DEPOLYMERIZING FACTOR 5-RELATED 145 193 - -
Cla02g01159 193 PANTHER COFILIN-RELATED 145 193 IPR017904 GO:0015629|GO:0030042
Cla02g01159 193 SMART adf_2 16 193 IPR002108 GO:0003779
Cla02g01159 193 Pfam Cofilin/tropomyosin-type actin-binding protein 18 94 IPR002108 GO:0003779
Cla02g01159 193 Pfam Cofilin/tropomyosin-type actin-binding protein 145 190 IPR002108 GO:0003779
Cla02g01159 193 ProSiteProfiles ADF-H domain profile. 11 193 IPR002108 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01159 K05765 CFL; cofilin - csv:101217451 271.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01159 Cla-Chr2:24960407 Cla07g00095 Cla-Chr7:1075437 1.67E-56 dispersed
Cla02g01159 Cla-Chr2:24960407 Cla04g00829 Cla-Chr4:23327068 5.01E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g144 . . . . . . . . . . Cma02g00246 Cma20g00758 . Car20g00659 . . . . . . . . . . . . . . . . . Cone12ag1226 . . . Lsi10g00487 . . . . . . . . . . . Sed01g0206 Cmo02g00247 Cmo20g00754 . . . . . . Bhi10g01861 Tan05g1152 Cmetu11g1192 . Hepe08g0285 . . Cla02g01159 Cam02g1235 Cec02g1244 Cco02g1284 Clacu02g1216 Cmu02g1185 Cre02g1496 . Csa02g01382 . Cme11g00388
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009905 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 4 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01159 Cla_Chr02 FPKM 3.749016 3.72534 3.743772 3.493563 7.002548 6.741571 7.88532 6.044397 4.689583 5.537024