Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01160 ATGGCCGCTTTTCTCTCCACTTCTCTTTCCCCTTTCTTCTTCCTTCTTCTCTCAATCCTTCTCTCTACAGTCTCAGCCGATTCGCCATTGAAGACCTTCATCTTCCGTGTCGATCGTTTCTCTAAACCCTCTGTTTTTCCTACCCATTACCACTGGTACACTTCCGAATTCGCCGAATCCCCCAAAATCCTCCATGTTTACGACACTGTCTTCCACGGATTCTCTGCAACTTTAACTCAAGACCAAGTCGATTCCATCGGAAAACACCCTTCTGTGCTCGCCGTTTTTGAGGACCGTCGTCGTCAGCTTCACACCACCCGTTCCCCTCAATTTCTCGGCCTTCGAAACCAGCGTGGTCTCTGGTCTGATTCCGATTACGGCTCCGATGTAATCATTGGAGTTTTCGATACTGGGATTTCCCCTGAACGACGAAGCTTCTCCGATGTGAATTTGGGGCCGATTCCTCGCCGGTGGAAAGGGGTTTGTGAGACTGGAACTAAGTTCTCGGCCAAGAACTGTAACAGGAAGATCGTTGGTGCGAGGTTTTTCTCTAAGGGTCATGAAGCAGGGTCCAACGCCGCCGGTCCGATTATTGGGATAAACGACACGATTGAGTACAGATCTCCGAGAGACGCTGACGGCCATGGGACACATACGGCGTCGACGGCGGCCGGACGGCACGCGTTTCAGGCTAGTCTGGAGGGTTATGCTTCTGGAATAGCAAAGGGCGTGGCCCCTAAGGCGCGTTTAGCGGTTTACAAAGTTTGTTGGAAAAACTCGGGTTGTTTTGATTCCGATATTCTCGCGGCGTTTGATGCTGCGGTTAACGACGGCGTCGACGTCATTTCGATCTCAATTGGAGGCGGCGATGGCGTTTCCTCACCGTATTATCTTGACCCAATTGCAATCGGAGCGTACGGCGCCGCTTCCAGGGGTGTTTTCGTTTCGTCTTCGGCTGGGAACGATGGACCCAATGGAATGTCAGTGACGAACTTGGCGCCGTGGGTTACGACGGTTGGAGCAGGTACGATCGATCGGAATTTCCCGGCGGTGGTGACTCTGGGAAACGGACGAAAGATTTCCGGGGTATCGCTCTACGCTGGAGCGCCGTTGAACGGTACAATGTATCCATTGGTTTACCCTGGGAAATCAGGAGTGCTCTCTGTTTCGCTCTGTATGGAGAATTCGCTCGATCCTAAGGCTGTTGCCGGAAAAATTGTGATCTGCGACAGGGGAAGTAATCCCAGAGTGGCTAAGGGTTTGGTCGTGAAGAAAGCCGGCGGCGTCGGAATGATTCTAGCAAACGGAATCTCAAACGGCGAAGGACTCGTCGGCGATGCTCATCTTCTTCCCGCCTGCGCAGTTGGCTCCGACGAAGGCGATGCCATGAAAGCCTACGCATCGTCCTCCGCAAATCCCACCGCCACCATCGCCTTCCAAGGCACTATAATCGGAATCAAACCGGCGCCAGTTGTGGCTTCGTTTTCCGCCAGAGGGCCAAACGGATTAAACCCAGAAATTCTAAAACCAGACTTAATCGCACCAGGGGTTAACATTCTCGCCGCCTGGACCGACGCCGTTGGTCCAACCGGTTTGGACTTCGATACACGAAAAACAGAGTTCAACATCTTGTCCGGTACATCAATGGCTTGCCCCCATGTAAGTGGAGCTGCTGCTCTGTTGAAATCAGCTCACCCAGATTGGAGTCCAGCAGCGTTAAGATCCGCCATGATGACCACCGCAAGTATTACCGATAATCGCCGCCAACCAATGACGGAAGAATCCACCGGAAAAGCTTCAACGCCTTACGATTTCGGTGCCGGACATGTAAATTTGGGGCTCGCAATGGACCCAGGTCTGGTCTACGACATTACGAACGCCGATTACATAAACTTCTTATGCTCAATCGGGTACGGACCGAAGATGATTCAGGTAATAACAAGAAAACCCGTGACATGTCCGGCGAAAAAACCATTACCGGAAAATCTCAATTACCCATCAATCGTAGCAGTATTTTCTAGTCTATCAAAAGGGTGGTCGACGAAGTCGTTTATCCGAACGGCGACGAACGTGGGTCCATCAAATTCAGTGTACAGAGCTAAAATCGAAGCTCCAAAGGGGGTTACAGTGAAGGTAAAACCATCGAAACTGGTATTTTCATCGACGGTGAAGAAACAGAGCTTCGTAGTGGCAATATCAGCCGACAATCAGAATCTGGCTCTGGGCGATGTGGGCGCTGTTTTTGGTTGGCTTTCTTGGTCCGATGGAAAACATGTGGTTCGTAGCCCACTGGTGGTGACCCAATTAGAGCCTTTGTAA 2319 51.32 MAAFLSTSLSPFFFLLLSILLSTVSADSPLKTFIFRVDRFSKPSVFPTHYHWYTSEFAESPKILHVYDTVFHGFSATLTQDQVDSIGKHPSVLAVFEDRRRQLHTTRSPQFLGLRNQRGLWSDSDYGSDVIIGVFDTGISPERRSFSDVNLGPIPRRWKGVCETGTKFSAKNCNRKIVGARFFSKGHEAGSNAAGPIIGINDTIEYRSPRDADGHGTHTASTAAGRHAFQASLEGYASGIAKGVAPKARLAVYKVCWKNSGCFDSDILAAFDAAVNDGVDVISISIGGGDGVSSPYYLDPIAIGAYGAASRGVFVSSSAGNDGPNGMSVTNLAPWVTTVGAGTIDRNFPAVVTLGNGRKISGVSLYAGAPLNGTMYPLVYPGKSGVLSVSLCMENSLDPKAVAGKIVICDRGSNPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACAVGSDEGDAMKAYASSSANPTATIAFQGTIIGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTDAVGPTGLDFDTRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAALRSAMMTTASITDNRRQPMTEESTGKASTPYDFGAGHVNLGLAMDPGLVYDITNADYINFLCSIGYGPKMIQVITRKPVTCPAKKPLPENLNYPSIVAVFSSLSKGWSTKSFIRTATNVGPSNSVYRAKIEAPKGVTVKVKPSKLVFSSTVKKQSFVVAISADNQNLALGDVGAVFGWLSWSDGKHVVRSPLVVTQLEPL 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24979009 24981327 + ClCG02G011830.1 Cla02g01160 267286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01160 772 ProSitePatterns Serine proteases, subtilase family, serine active site. 546 556 IPR023828 -
Cla02g01160 772 Gene3D Peptidase S8/S53 domain 129 629 IPR036852 GO:0004252|GO:0006508
Cla02g01160 772 CDD Peptidases_S8_3 102 582 IPR034197 -
Cla02g01160 772 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 21 766 - -
Cla02g01160 772 ProSiteProfiles Serine proteases, subtilase domain profile. 102 616 - -
Cla02g01160 772 SUPERFAMILY PA domain 390 469 IPR046450 -
Cla02g01160 772 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 21 766 IPR045051 -
Cla02g01160 772 SUPERFAMILY Subtilisin-like 103 620 IPR036852 GO:0004252|GO:0006508
Cla02g01160 772 Pfam Peptidase inhibitor I9 48 104 IPR010259 -
Cla02g01160 772 PRINTS Subtilisin serine protease family (S8) signature 127 146 IPR015500 -
Cla02g01160 772 PRINTS Subtilisin serine protease family (S8) signature 211 224 IPR015500 -
Cla02g01160 772 PRINTS Subtilisin serine protease family (S8) signature 545 561 IPR015500 -
Cla02g01160 772 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 104 IPR037045 -
Cla02g01160 772 Pfam PA domain 376 462 IPR003137 -
Cla02g01160 772 Pfam Subtilase family 127 590 IPR000209 GO:0006508|GO:0008236
Cla02g01160 772 Pfam Fibronectin type-III domain 662 766 IPR041469 -
Cla02g01160 772 Gene3D - 345 484 - -
Cla02g01160 772 Gene3D - 633 769 - -
Cla02g01160 772 CDD PA_subtilisin_like 351 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01160 Cla-Chr2:24979009 Cla09g00121 Cla-Chr9:1241448 0 dispersed
Cla10g00388 Cla-Chr10:5273841 Cla02g01160 Cla-Chr2:24979009 0 dispersed
Cla11g01151 Cla-Chr11:24062722 Cla02g01160 Cla-Chr2:24979009 1.52E-94 dispersed
Cla02g01160 Cla-Chr2:24979009 Cla01g01692 Cla-Chr1:31854378 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01160 - - csv:101217844 1441.4