Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01162 ATGGCGTCTTCAAAGCCAAAACCCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCATCCTCCCTCTATCCCTCCGTCGACATGAAAGACCTCGCCGAGAATCTCTTTCCGGACGAAGACCCCCCTGTTTCCGGCCACAAACACCCCGACTCCTTCGAACAAGTCCTCGTTCGGATTCCAGGCGCCATCGTCCATTTAATCGAAAAACAAAACAGCATAGAACTCGCTTCCGGTGAGTTCTCGATCGTAGGTCTCAACCAAGGGAACAACGTCGTCGCTGTACTCGCTCGTATTGGGGATGAGATTCAATGGCCATTAGCCAAAGACGAACCCGCTGTAAAACTTGACGATTCTCACTACTTTTTCACTCTCAGCGTTCCCTCAAATGGGTCATCGGGAAATCACGATTCCGCCACCGGCCATGCTAATCGAGAGCCGGAAATGTTGAACTACGGCCTGACCGTTGCGTCAAAAGGGCAGGAGGATCGATTGAAGGAGTTGGATCGGATATTAGATCAGTACAGTTGTTTTTCGGTTCAGAAAGTGGAGGAATCAGCGAAGTGGGAGGTTTTGGATGGATCAGTGGCGAGGGAAATCTCGCCGGAAGATATGGCGGCGTCTGAGGAGAAAAGGGATTTGCTAGAAGAAAGATCTGCTGCTTATTGGACAACATTGGCGCCGAACGTCGACGATTACAGCGGCAAAGTCGCACGGCTGATTGCGGCCGGTTCTGGACAAGTGATTAAGGGGATTTTGTGGTGTGGGGATGTAACTGTGGATCGATTGAACTGGGGAAATGAGTTCATGAAGAAACGGATGGGGCCTCGATCTGATGCAGAGATAAGTCCGGCGGCCATGAAGAGTATAAAGAGTGTGAAGAAGCTGACGAAGATGACGGAGAAAGTGGCGAATGGAATACTTTCTGGCGTAGTGAAAGTGTCTGGATTCTTCACAAGTTCGATAGTAAACTCTAAAGTGGGGAAGAAGTTCTTCAGTCTTCTTCCTGGAGAAATTGTTCTTGCTTCATTGGATGGATTCAACATTGGAAGTGGTTTACTCATGTCTCATGTGAAATCTGTATGGACAGACAAGGTTTGCGATGCAGTTGAAGTGGCAGGAAAGAATGTGATGTCTACTACATCCGTTGTGACTACAGGACTTGTTTCAGAAAGATATGGAGATGAAGCAGGGAAAGCAACGAATGAAGGGCTTGGTGCAGCAGGGCATGCGATTGGAACAGCATGGGCTGTGTTGAAGATCAGAAAGGCTTTAAACCCAAAAAGTGCTTTCAAGCCAACTACTCTTGTAAAAGCAGCTGCTGCCCATTCTAATTCCTCTAGGCCTACTTCTAAGTAA 1365 47.84 MASSKPKPTSSSSSSSSSSSSSSSLYPSVDMKDLAENLFPDEDPPVSGHKHPDSFEQVLVRIPGAIVHLIEKQNSIELASGEFSIVGLNQGNNVVAVLARIGDEIQWPLAKDEPAVKLDDSHYFFTLSVPSNGSSGNHDSATGHANREPEMLNYGLTVASKGQEDRLKELDRILDQYSCFSVQKVEESAKWEVLDGSVAREISPEDMAASEEKRDLLEERSAAYWTTLAPNVDDYSGKVARLIAAGSGQVIKGILWCGDVTVDRLNWGNEFMKKRMGPRSDAEISPAAMKSIKSVKKLTKMTEKVANGILSGVVKVSGFFTSSIVNSKVGKKFFSLLPGEIVLASLDGFNIGSGLLMSHVKSVWTDKVCDAVEVAGKNVMSTTSVVTTGLVSERYGDEAGKATNEGLGAAGHAIGTAWAVLKIRKALNPKSAFKPTTLVKAAAAHSNSSRPTSK 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24990143 24993269 + ClCG02G011850.1 Cla02g01162 267288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01162 454 MobiDBLite consensus disorder prediction 1 27 - -
Cla02g01162 454 PANTHER SPARTIN 7 449 IPR045036 -
Cla02g01162 454 Pfam Senescence domain 242 443 IPR009686 -
Cla02g01162 454 PANTHER OS06G0717100 PROTEIN 7 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01162 K19366 SPG20; spartin - csv:101218079 741.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01162 Cla-Chr2:24990143 Cla10g00065 Cla-Chr10:698310 5.18E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g148 . . . Bda08g00997 . . Bma05g00361 . . . Cma02g00252 . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00490 . Chy11g00261 . . . . . . Bpe05g00284 . . Sed02g0073 Cmo02g00251 . . . . . . Cpe05g01377 Bhi10g01858 Tan05g1147 Cmetu11g2225 . Hepe08g0287 . . Cla02g01162 Cam02g1238 Cec02g1247 Cco02g1287 Clacu02g1220 Cmu02g1188 Cre02g1499 . Csa02g01384 . Cme11g00386
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002053 1 1 3 3 1 2 3 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 5 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01162 Cla_Chr02 FPKM 47.432724 49.336899 72.583977 73.805542 41.745438 43.840481 45.751518 59.131863 55.850925 56.008865