Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01166 ATGAGTGTTTCCAGGTTTATTAAGTGTGTTACGGTTGGTGATGGTGCTGTTGGGAAAACCTGTATGCTTATCTCCTACACCAGCAACACTTTCCCCACGGATTATGTGCCAACTGTTTTCGACAATTTTAGCGCAAATGTAGTTGTGGATGGCAGCACGGTCAACCTAGGCTTGTGGGATACTGCTGGCCAGGAAGATTACAATAGATTGAGACCTTTGAGCTACCGTGGAGCAGATGTATTTCTGTTAGCATTCTCTCTCATAAGCAGGGCTAGCTACGAAAATGTTGCCAAAAAATGGATTCCTGAGCTAAGGCATTATGCTCCTGGTGTACCAGTTATTCTCGTCGGGACTAAGCTTGGTTATATTCTTCACCACCTTTCTAATCTTCGAGAAGATAAACAGTACCTAAACGAACACCCAGGGATCGTGCCAATTACCACAGCTCAGGGGGAGGAACTGAGAAAACTCATTGGTGCCCCAGTTTACATTGAATGCAGTTCGAAAACACAGCAAAATGTGAAAGCAGTCTTCGACGCAGCAATCAAAGTGGTTCTCCAGCCTCCAAAGCGTAAGAAGCGAAAGAAGAGAAAGGCACAGAAGGCTTGTTCTATATTGTGA 621 44.77 MSVSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVAKKWIPELRHYAPGVPVILVGTKLGYILHHLSNLREDKQYLNEHPGIVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKRKKRKKRKAQKACSIL 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25096127 25099440 + ClCG02G011900.1 Cla02g01166 267292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01166 206 PANTHER RHO FAMILY GTPASE 1 206 IPR003578 GO:0005525|GO:0007264
Cla02g01166 206 SMART rab_sub_5 7 188 - -
Cla02g01166 206 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 206 - -
Cla02g01166 206 Gene3D - 2 206 IPR027417 -
Cla02g01166 206 ProSiteProfiles small GTPase Ras family profile. 2 206 IPR001806 GO:0003924|GO:0005525
Cla02g01166 206 SMART rho_sub_3 9 188 IPR001806 GO:0003924|GO:0005525
Cla02g01166 206 Pfam Ras family 8 186 IPR001806 GO:0003924|GO:0005525
Cla02g01166 206 SMART ras_sub_4 4 188 - -
Cla02g01166 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 186 IPR027417 -
Cla02g01166 206 TIGRFAM small_GTP: small GTP-binding protein domain 7 158 IPR005225 GO:0005525
Cla02g01166 206 CDD Rop_like 6 186 - -
Cla02g01166 206 PRINTS Transforming protein P21 ras signature 7 28 - -
Cla02g01166 206 PRINTS Transforming protein P21 ras signature 163 185 - -
Cla02g01166 206 PRINTS Transforming protein P21 ras signature 30 46 - -
Cla02g01166 206 PRINTS Transforming protein P21 ras signature 109 122 - -
Cla02g01166 206 PRINTS Transforming protein P21 ras signature 47 69 - -
Cla02g01166 206 ProSiteProfiles small GTPase Rab1 family profile. 2 206 - -
Cla02g01166 206 ProSiteProfiles small GTPase Rho family profile. 1 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01166 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - csv:101219263 362.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00991 Cla-Chr2:17152767 Cla02g01166 Cla-Chr2:25096127 1.14E-119 dispersed
Cla02g01166 Cla-Chr2:25096127 Cla06g01646 Cla-Chr6:29980366 8.66E-104 dispersed
Cla02g01166 Cla-Chr2:25096127 Cla11g00213 Cla-Chr11:2482947 2.84E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g158 . . . . . . Bma05g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00494 . Chy11g00256 . . . . . . Bpe05g00288 . . Sed01g0196 Cmo02g00254 . . . . . . Cpe05g01373 Bhi10g01852 Tan05g1137 Cmetu11g1470 . Hepe08g0292 . . Cla02g01166 Cam02g1244 Cec02g1253 Cco02g1294 Clacu02g1226 Cmu02g1193 Cre02g1505 . Csa02g01391 . Cme11g00381
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01166 Cla_Chr02 FPKM 7.445549 9.395342 12.555176 13.835643 52.485035 45.192966 50.634544 18.981983 20.741228 19.485346