Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01167 ATGACAGTTGATCAGGAAGATTCTGAGGCTATTGAAAAGGAAAAGGAAAAGAAGAAGAAGAATGTGTTAGTGGGGATTAGGATAAATGGGGATAGTAGAGACCTGCTCAACTGGGCGATTGTTAAAGTTGCTGATCCTGGGGATTGTGTCATTGTAATCCATGTTTGTCAAAGTTCTGACCGTGCATCGAAAGATAAGCCCTTATTTGATGAATTCCTAGAAGGATACAAAAGCCTTTGTAATGTAAACAAGGTAGCTCTTATTGCTCATATATTGACTGGAAGTTCGGTTAAGAAGACTCTGGTCAGACAGGCAAAAAACTATGCTGCCAGGGCTGTGGTTTTGGGAACAAGCAAACCATCTAATCTTGGGGGTTGGTCTTCAACAACTAGATACTTTGTTAAGCGACTGCCTCCAACTACCGATGTTTTGGCTCTCAACAATGGCAAAATTGTCTTCAGAAGATTCACCAATGATCAACTACCAGGCTTGAGTCTAGACCCAAAACCAAGTTTTAGTCAGGCTAGTCAATCTGACGTTGATGGCTCTGAGACTGAGAAATCTGTTTCTTATGGGGTTGGTAGTGAAGACTTGAAGGACGAAGTTCATGGAGTTGTCGCTGAAAGTAAAAGAAACTGTTCCAAACCAGATTCTTCAATGAAGATGGAGCATTCCCAGCCGGGGCTTGGTTGGCCATTGCTCCGGACGACTCCAAGGATTTCGCAAACCCCATGTGTACATAACATGTCTGTAGTGCAATGGGTGATGAACTTACCCGATCGCTCCCCATATCAAAGTTTAAGCATAAAAGGAAATGATCCATCAAAAAGCGAGATCCCTGGTTTTGTGGATGAGAGAGCTAAAGGCAGTTTATCTTCCTTTTCTGAACCACCAGAAGACTTGGAGGATCTCCTGAAAATTAACTCAACTAGTTATAAATGGTTCAGTCCTGATGTGTTGAAAACTTCAACTTCTCATTTCTCTTCAGAAAACCTGATCGGGAAAGGCGGTTGCAATCGTGTATACAAAGGAATTCTCCCAGATGGAAAGCCAGTAGCAGTTAAAGTAATGAACTCGTCCAAACAGGCGTGGAATGAATTTTCTCGGGAAGTTGACATTATATCCTCATTACATCACAGAAACATAACTCCCTTTCTCGGTATCTGCATCGTAGACGATAAATTGATCTCTGTTTATGATTTCTTTTCCAAAGGAAGTTTAGAGGAAAATCTATATGATAAGAACAAAGAAAAAAACATACTTTCATGGGAGGTAAGATTCAGATTGGCTATTGGAATTGCGGAAGCACTAAACTACCTACATGATGAATGTCCTCGACCTGTTGTGCACCGAGACGTTAAGACATCAAACATTCTGCTCACTGATGAACTTGAACCAAAGTTATCCGATTTTGGGCTTGCTATATGGGGACCAACAGAATCATCCTTTCAGATCGAAGCTGATGTCGTTGGAACATTTGGATATCTTGCTCCAGAATATTTCATGTATGGAAAAATGAGCAATAAGATTGATGTGTATGCCTTTGGTATCGTTCTACTTGAATTGTTATCTGGACGAAGAGCAATCAGCGCAGAGACTTCGAAAGAGCAACAGAGCTTGGTTATGTGGGCTAAGCCAATCATAGAGAGTGGCAACGTAAAGGATATAGTTGATCCAAATTTGGAGGGAAAAATCGACGATGAACAGCTGCAGAGAATGGTTCTTGCAGCAACCCTTTGCATCACAAGGGCGTCTCGACTCCGTCCTAGAATTAGTCAGATATTGAAGATTCTAAGGGGGGAAAGCGATACCGAAAGCCTCCCTATGGAGGATTCTAAAAGTGTGGAAAATGGAGATGATGAAGTTTATCCAAATTCAAGTTCTGAACTGCATTTAAACCTTGCATTGCTTGGTGTTGATGATGGTGGTGGGGACTCATTTAGCAGTGTGGAACAAACAAAGAGGCTTTCATTGGAAGATTATTTCAAAGAAAGATGGAGCAGATCCTCAAGCTTCAACTAG 2022 41.44 MTVDQEDSEAIEKEKEKKKKNVLVGIRINGDSRDLLNWAIVKVADPGDCVIVIHVCQSSDRASKDKPLFDEFLEGYKSLCNVNKVALIAHILTGSSVKKTLVRQAKNYAARAVVLGTSKPSNLGGWSSTTRYFVKRLPPTTDVLALNNGKIVFRRFTNDQLPGLSLDPKPSFSQASQSDVDGSETEKSVSYGVGSEDLKDEVHGVVAESKRNCSKPDSSMKMEHSQPGLGWPLLRTTPRISQTPCVHNMSVVQWVMNLPDRSPYQSLSIKGNDPSKSEIPGFVDERAKGSLSSFSEPPEDLEDLLKINSTSYKWFSPDVLKTSTSHFSSENLIGKGGCNRVYKGILPDGKPVAVKVMNSSKQAWNEFSREVDIISSLHHRNITPFLGICIVDDKLISVYDFFSKGSLEENLYDKNKEKNILSWEVRFRLAIGIAEALNYLHDECPRPVVHRDVKTSNILLTDELEPKLSDFGLAIWGPTESSFQIEADVVGTFGYLAPEYFMYGKMSNKIDVYAFGIVLLELLSGRRAISAETSKEQQSLVMWAKPIIESGNVKDIVDPNLEGKIDDEQLQRMVLAATLCITRASRLRPRISQILKILRGESDTESLPMEDSKSVENGDDEVYPNSSSELHLNLALLGVDDGGGDSFSSVEQTKRLSLEDYFKERWSRSSSFN 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25114788 25118746 + ClCG02G011910.1 Cla02g01167 267293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01167 673 MobiDBLite consensus disorder prediction 209 230 - -
Cla02g01167 673 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 18 645 - -
Cla02g01167 673 CDD USP_Like 21 144 - -
Cla02g01167 673 Pfam Protein kinase domain 328 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01167 673 Gene3D Phosphorylase Kinase; domain 1 297 401 - -
Cla02g01167 673 SMART serkin_6 327 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01167 673 Gene3D Transferase(Phosphotransferase) domain 1 402 615 - -
Cla02g01167 673 ProSiteProfiles Protein kinase domain profile. 327 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01167 673 Pfam Universal stress protein family 20 137 IPR006016 -
Cla02g01167 673 MobiDBLite consensus disorder prediction 605 626 - -
Cla02g01167 673 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 138 - -
Cla02g01167 673 Gene3D HUPs 3 144 IPR014729 -
Cla02g01167 673 MobiDBLite consensus disorder prediction 164 194 - -
Cla02g01167 673 PANTHER OS08G0249100 PROTEIN 18 645 - -
Cla02g01167 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Cla02g01167 673 MobiDBLite consensus disorder prediction 167 190 - -
Cla02g01167 673 SUPERFAMILY Protein kinase-like (PK-like) 308 598 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01167 - - - csv:101206547 1155.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01567 Cla-Chr1:30343680 Cla02g01167 Cla-Chr2:25114788 2.39E-16 dispersed
Cla02g00389 Cla-Chr2:3750952 Cla02g01167 Cla-Chr2:25114788 1.16E-68 dispersed
Cla02g01167 Cla-Chr2:25114788 Cla08g00627 Cla-Chr8:18303997 2.06E-24 dispersed
Cla03g00818 Cla-Chr3:10425546 Cla02g01167 Cla-Chr2:25114788 2.06E-70 dispersed
Cla02g01167 Cla-Chr2:25114788 Cla11g00221 Cla-Chr11:2548037 1.56E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g160 . Blo15g00380 Bda06g00477 Bda08g00992 Bpe07g00715 . Bma05g00367 Bma12g00919 . . Cma02g00258 Cma20g00752 . Car20g00653 . . . . . . . . . . . . . . . . . . . . . Lsi10g00758 . Chy11g00254 . . . . . . Bpe05g00289 . . . Cmo02g00255 Cmo20g00747 . . . . Cpe16g00317 Cpe05g01372 Bhi10g01849 . . . . . . Cla02g01167 . . . . . . . Csa02g01393 . Cme11g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005074 2 4 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 0 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80345 PF00069 Pkinase 2.90E-41 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01167 Cla_Chr02 FPKM 22.583542 22.743256 11.99229 11.809618 3.890654 3.211482 3.110507 9.788623 9.007454 7.965402