Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01168 ATGGAAGACGGGGAGCTTGAATCCTCGAACCCTGAAGTGTTTTCGAGTTCGAATGCTGTTGAGCTTCCGAGCAGTTGCTCAATGGATAGCTTCTTTGATGAAATTCTGAAGGACACTCATGCTTGCACACATGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCACATACACACACCTGTTTTCATGTCCATACGAAAATTGTCTCTTCCCCCACTGAAGAAAAGGTTTCCACTGACGACACAGCGGAGTCTGTGGACAAAAAGAACAAGAAGCGGCCGCTTGGTAATCGTGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCGAGGGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGAATTGAAGGGGAGATTGGAACGTTTCCATATCGGAAACCAGCCAATTCAGATCTGCCCAATCAAAATGTGCCGGGTAGTTACATGGTGAATCCATGTAATGTGCAATGCAATGATCAAGCATATTGCCTTCACCCAGGGGACGATGGAAAAAGTGGAGAGAGCGTTTCGTTGAATGGGCAAAGTTTTAGTGCGTGTGACTTTGAAAATCTTCAGTGCTTGGCAAATCAAAACACGGGAGTAAAGGAACTTCCTGACTGTGGACTAGGAAACACAATTTCTAACGTTAATTGCTCAGAATTAAATCCGAAGAAAGCTCGAGGACTTGCCTCTTTTTGTCTTCAGCTACTAACAACTCTTTATATGATGCTCACGGTTCAATTAGGAGGAGGGCCTGCCACGTCCGTTCCTGTTCTGTTCAATGCAGCACCAACATTGACTTTCAGGTTTTCTCTTCCGCAACCCATTCACCTGCTTTCTAGGTTGTTTGGGATGGTTTCTGAGGATATTGTTGGCGGTTTTAGCAAACTTTCCCTCTTTCTAAGCCAAGAAATTTCATGGATTATTGGAATTACAGAACTAGGAAATGGTGGGATTTCATCTAAGAAGAAAGGTGTCGACCAAGTGGGGTTCACCATTGTTGGTGACAAAATGCTTGTGGCTGTACTTTTGAGTTCTCTGATGAAGTATGTCCACTAG 1164 44.59 MEDGELESSNPEVFSSSNAVELPSSCSMDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYRKPANSDLPNQNVPGSYMVNPCNVQCNDQAYCLHPGDDGKSGESVSLNGQSFSACDFENLQCLANQNTGVKELPDCGLGNTISNVNCSELNPKKARGLASFCLQLLTTLYMMLTVQLGGGPATSVPVLFNAAPTLTFRFSLPQPIHLLSRLFGMVSEDIVGGFSKLSLFLSQEISWIIGITELGNGGISSKKKGVDQVGFTIVGDKMLVAVLLSSLMKYVH 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25125949 25128876 + ClCG02G011920.1 Cla02g01168 267294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01168 387 Coils Coil 98 132 - -
Cla02g01168 387 SMART brlzneu 84 152 IPR004827 GO:0003700|GO:0006355
Cla02g01168 387 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
Cla02g01168 387 MobiDBLite consensus disorder prediction 77 97 - -
Cla02g01168 387 PANTHER BASIC LEUCINE ZIPPER 23 1 240 - -
Cla02g01168 387 Gene3D - 75 153 - -
Cla02g01168 387 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Cla02g01168 387 MobiDBLite consensus disorder prediction 72 97 - -
Cla02g01168 387 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 240 - -
Cla02g01168 387 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Cla02g01168 387 CDD bZIP 91 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01168 K25785 BZIP19_23_24; bZIP transcription factor 19/23/24 - csv:101219501 503.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01168 Cla-Chr2:25125949 Cla07g00826 Cla-Chr7:22932504 2.68E-06 dispersed
Cla02g00428 Cla-Chr2:4199100 Cla02g01168 Cla-Chr2:25125949 3.13E-144 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01246 . 89 325 bZIP Transcription Factor Family AT5G24800 51.6 3.1e-51 199.1
Cla10g00124 CCT 1 344 bZIP Transcription Factor Family AT2G35530 67.3 2.5e-105 379.4
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT2G35530 60.2 4.9e-101 365.2
Cla02g01861 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.6e-69 259.6
Cla02g00474 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.9e-38 155.2
Cla02g00475 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 3.4e-37 152.9
Cla02g01168 . 1 233 bZIP Transcription Factor Family AT4G35040 62.1 8.0e-65 244.2
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT4G35040 58.8 4.6e-60 228.4
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT5G06950 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT5G06950 72.0 2.6e-129 458.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT5G06950 69.9 3.6e-118 421.8
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT5G06950 57.0 2.7e-110 395.6
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT5G06950 60.6 1.7e-88 323.2
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.6e-86 316.6
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06950 55.8 1.3e-83 307.0
Cla07g00891 . 78 360 bZIP Transcription Factor Family AT5G06950 54.0 2.4e-74 276.2
Cla11g00770 CCT,ECH 130 422 bZIP Transcription Factor Family AT5G06950 51.8 1.2e-70 263.8
Cla01g01215 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.7e-130 461.1
Cla02g02151 . 199 510 bZIP Transcription Factor Family AT1G08320 68.3 7.2e-117 417.5
Cla05g02693 . 67 377 bZIP Transcription Factor Family AT1G08320 56.6 1.1e-91 334.0
Cla10g01652 . 172 466 bZIP Transcription Factor Family AT1G08320 58.6 2.6e-90 329.3
Cla08g00534 . 236 526 bZIP Transcription Factor Family AT1G08320 58.8 7.5e-90 327.8
Cla08g01072 CCT,ECH 163 516 bZIP Transcription Factor Family AT1G08320 51.1 2.4e-88 322.8
Cla02g01168 . 1 266 bZIP Transcription Factor Family AT2G16770 59.2 5.3e-66 248.1
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT2G16770 56.4 4.4e-60 228.4
Cla08g01072 CCT,ECH 142 516 bZIP Transcription Factor Family AT5G06960 66.4 3.0e-119 425.2
Cla05g02693 . 44 377 bZIP Transcription Factor Family AT5G06960 69.8 1.8e-116 416.0
Cla08g00534 . 221 526 bZIP Transcription Factor Family AT5G06960 68.0 6.5e-106 380.9
Cla10g01552 . 157 563 bZIP Transcription Factor Family AT5G06960 54.2 6.5e-98 354.4
Cla10g01652 . 181 466 bZIP Transcription Factor Family AT5G06960 60.1 1.5e-86 316.6
Cla01g01215 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.9e-83 304.7
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06960 54.8 6.6e-82 301.2
Cla07g00891 . 53 360 bZIP Transcription Factor Family AT5G06960 51.3 2.1e-72 269.6
Cla02g00474 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 8.5e-133 471.1
Cla02g00475 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cla05g00774 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cla02g00475 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cla02g00474 . 64 535 bZIP Transcription Factor Family AT2G21230 54.1 1.2e-99 360.9
Cla02g00218 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.9e-57 219.2
Cla08g01575 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.4e-86 315.8
Cla01g01889 . 1 350 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT3G12250 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT3G12250 71.5 8.4e-128 453.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT3G12250 69.0 3.9e-117 418.3
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT3G12250 57.4 3.6e-110 395.2
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT3G12250 60.3 8.5e-88 320.9
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.5e-84 310.1
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT3G12250 56.4 4.4e-84 308.5
Cla07g00891 . 47 360 bZIP Transcription Factor Family AT3G12250 51.5 1.4e-74 276.9
Cla11g00770 CCT,ECH 121 422 bZIP Transcription Factor Family AT3G12250 50.6 3.6e-70 262.3
Cla08g00534 . 75 526 bZIP Transcription Factor Family AT1G68640 62.5 8.8e-144 507.3
Cla05g02693 . 21 377 bZIP Transcription Factor Family AT1G68640 60.3 5.0e-107 385.2
Cla08g01072 CCT,ECH 117 516 bZIP Transcription Factor Family AT1G68640 55.6 5.6e-106 381.7
Cla10g01552 . 134 563 bZIP Transcription Factor Family AT1G68640 51.5 1.0e-99 360.9
Cla10g01652 . 183 466 bZIP Transcription Factor Family AT1G68640 56.8 9.9e-87 317.8
Cla01g01215 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cla02g02151 . 179 483 bZIP Transcription Factor Family AT1G68640 53.0 3.1e-80 296.2
Cla08g00706 . 9 337 bZIP Transcription Factor Family AT1G43700 50.1 3.9e-59 225.7
Cla05g00118 . 11 416 bZIP Transcription Factor Family AT2G46270 50.9 6.4e-81 298.1
Cla05g00774 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.1e-113 407.1
Cla05g00777 . 81 396 bZIP Transcription Factor Family AT2G31370 67.4 2.3e-103 372.9
Cla08g00864 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.5e-71 264.6
Cla10g00124 CCT 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.1e-97 354.0
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT1G32150 59.8 1.0e-92 337.4
Cla05g00774 . 10 365 bZIP Transcription Factor Family AT1G06070 69.7 2.5e-124 442.6
Cla05g00777 . 39 395 bZIP Transcription Factor Family AT1G06070 68.5 3.2e-119 425.6
Cla08g00706 . 146 312 bZIP Transcription Factor Family AT1G06070 56.5 1.6e-38 157.5
Cla02g00475 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 6.1e-38 155.6
Cla02g00474 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
Cla08g01575 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.4e-86 315.8
Cla10g00124 CCT 1 344 bZIP Transcription Factor Family AT2G35530 67.3 2.5e-105 379.4
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT2G35530 60.2 4.9e-101 365.2
Cla02g01861 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.6e-69 259.6
Cla02g00474 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.9e-38 155.2
Cla02g00475 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 3.4e-37 152.9
Cla02g01168 . 1 233 bZIP Transcription Factor Family AT4G35040 62.1 8.0e-65 244.2
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT4G35040 58.8 4.6e-60 228.4
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT5G06950 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT5G06950 72.0 2.6e-129 458.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT5G06950 69.9 3.6e-118 421.8
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT5G06950 57.0 2.7e-110 395.6
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT5G06950 60.6 1.7e-88 323.2
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.6e-86 316.6
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06950 55.8 1.3e-83 307.0
Cla07g00891 . 78 360 bZIP Transcription Factor Family AT5G06950 54.0 2.4e-74 276.2
Cla11g00770 CCT,ECH 130 422 bZIP Transcription Factor Family AT5G06950 51.8 1.2e-70 263.8
Cla01g01215 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.7e-130 461.1
Cla02g02151 . 199 510 bZIP Transcription Factor Family AT1G08320 68.3 7.2e-117 417.5
Cla05g02693 . 67 377 bZIP Transcription Factor Family AT1G08320 56.6 1.1e-91 334.0
Cla10g01652 . 172 466 bZIP Transcription Factor Family AT1G08320 58.6 2.6e-90 329.3
Cla08g00534 . 236 526 bZIP Transcription Factor Family AT1G08320 58.8 7.5e-90 327.8
Cla08g01072 CCT,ECH 163 516 bZIP Transcription Factor Family AT1G08320 51.1 2.4e-88 322.8
Cla02g01168 . 1 266 bZIP Transcription Factor Family AT2G16770 59.2 5.3e-66 248.1
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT2G16770 56.4 4.4e-60 228.4
Cla08g01072 CCT,ECH 142 516 bZIP Transcription Factor Family AT5G06960 66.4 3.0e-119 425.2
Cla05g02693 . 44 377 bZIP Transcription Factor Family AT5G06960 69.8 1.8e-116 416.0
Cla08g00534 . 221 526 bZIP Transcription Factor Family AT5G06960 68.0 6.5e-106 380.9
Cla10g01552 . 157 563 bZIP Transcription Factor Family AT5G06960 54.2 6.5e-98 354.4
Cla10g01652 . 181 466 bZIP Transcription Factor Family AT5G06960 60.1 1.5e-86 316.6
Cla01g01215 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.9e-83 304.7
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06960 54.8 6.6e-82 301.2
Cla07g00891 . 53 360 bZIP Transcription Factor Family AT5G06960 51.3 2.1e-72 269.6
Cla02g00474 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 8.5e-133 471.1
Cla02g00475 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cla05g00774 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cla02g00475 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cla02g00474 . 64 535 bZIP Transcription Factor Family AT2G21230 54.1 1.2e-99 360.9
Cla02g00218 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.9e-57 219.2
Cla01g01889 . 1 350 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT3G12250 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT3G12250 71.5 8.4e-128 453.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT3G12250 69.0 3.9e-117 418.3
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT3G12250 57.4 3.6e-110 395.2
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT3G12250 60.3 8.5e-88 320.9
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.5e-84 310.1
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT3G12250 56.4 4.4e-84 308.5
Cla07g00891 . 47 360 bZIP Transcription Factor Family AT3G12250 51.5 1.4e-74 276.9
Cla11g00770 CCT,ECH 121 422 bZIP Transcription Factor Family AT3G12250 50.6 3.6e-70 262.3
Cla08g00534 . 75 526 bZIP Transcription Factor Family AT1G68640 62.5 8.8e-144 507.3
Cla05g02693 . 21 377 bZIP Transcription Factor Family AT1G68640 60.3 5.0e-107 385.2
Cla08g01072 CCT,ECH 117 516 bZIP Transcription Factor Family AT1G68640 55.6 5.6e-106 381.7
Cla10g01552 . 134 563 bZIP Transcription Factor Family AT1G68640 51.5 1.0e-99 360.9
Cla10g01652 . 183 466 bZIP Transcription Factor Family AT1G68640 56.8 9.9e-87 317.8
Cla01g01215 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cla02g02151 . 179 483 bZIP Transcription Factor Family AT1G68640 53.0 3.1e-80 296.2
Cla08g00706 . 9 337 bZIP Transcription Factor Family AT1G43700 50.1 3.9e-59 225.7
Cla05g00118 . 11 416 bZIP Transcription Factor Family AT2G46270 50.9 6.4e-81 298.1
Cla05g00774 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.1e-113 407.1
Cla05g00777 . 81 396 bZIP Transcription Factor Family AT2G31370 67.4 2.3e-103 372.9
Cla08g00864 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.5e-71 264.6
Cla10g00124 CCT 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.1e-97 354.0
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT1G32150 59.8 1.0e-92 337.4
Cla05g00774 . 10 365 bZIP Transcription Factor Family AT1G06070 69.7 2.5e-124 442.6
Cla05g00777 . 39 395 bZIP Transcription Factor Family AT1G06070 68.5 3.2e-119 425.6
Cla08g00706 . 146 312 bZIP Transcription Factor Family AT1G06070 56.5 1.6e-38 157.5
Cla02g00475 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 6.1e-38 155.6
Cla02g00474 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
Cla08g01246 . 89 325 bZIP Transcription Factor Family AT5G24800 51.6 3.1e-51 199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001037 1 3 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 11 9 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60647 PF07716 bZIP_2 1.90E-14 CL0018 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01168 Cla_Chr02 FPKM 44.281975 44.26543 28.861462 29.549269 81.936523 78.677261 86.844353 2.761668 2.234113 2.790661