Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01174 ATGTCTGGTTCAAAGGAAGGAGTGATTATTGGAGAAAGAGAGCATAATGATGAGGAGCAGAGGAAGGACTATGTGGATCCACCAGCAGCTCCATTGATGGGGTTCTCAGAGTTGAAGAAATGGTCGTTTTACAGAGCTGTAATTGCAGAGTTTATGGCAACATTACTTTTCCTTTATATCACCATAGCCACTGCCATTGGAAACAACAATGCACAAACAACAGGGCCCTGTTATGGCGTTGGGGTTCTGGGCATAGCATGGGCCTTCGGCGCCGTCATCTTCGTCCTTGTTTACTGCACCGCCGGTATTTCAGGCGGCCATATCAACCCCGCCATCACGTTCGGGATGCTGTTGGCCAGAAAGTTGTCGCTGATTCGCGCGGTCGCTTACATAGCGGCGCAGTCTCTGGGAGCCATTGCCGGCGTTGCATTGGTTAAAGCTCTCATGAGGCACGCTTACAACAGCAACGGCGGCGGAGCCAATGTCGTCGCCGCCGGGTTCAGCAAAGGCGCCGCCCTTGGCGCCGAGATCATCGGCACTTTTTTGCTGGTGTACACTGTATTCTCCGCCACTGACCCAAAAAGAAACGCCCGAGACTCCCATGTTCCTGTTTTGGCTCCATTGCCTATCGGACTTGCGGTCTTTGTAGTGCATCTAGCTACGATTCCGATCACCGGCACCGGCATCAACCCTGCTCGGAGCTTGGGCGCTGCCGTCATGTTCAACAACAGAAGAGTTTGGAGTCAACATTGGATATTTTGGGTTGGGCCATTTGTTGGGGCGTTGGCAGCGGCGGCGTACCATCAATACGTTCTCAGAGCGGCGGCTGTCAAAGCTCTTGGATCCTTTCGTAGTAACCGTTCCGGCTAG 870 53.1 MSGSKEGVIIGEREHNDEEQRKDYVDPPAAPLMGFSELKKWSFYRAVIAEFMATLLFLYITIATAIGNNNAQTTGPCYGVGVLGIAWAFGAVIFVLVYCTAGISGGHINPAITFGMLLARKLSLIRAVAYIAAQSLGAIAGVALVKALMRHAYNSNGGGANVVAAGFSKGAALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFVVHLATIPITGTGINPARSLGAAVMFNNRRVWSQHWIFWVGPFVGALAAAAYHQYVLRAAAVKALGSFRSNRSG 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25220123 25223588 + ClCG02G011980.1 Cla02g01174 267300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01174 289 MobiDBLite consensus disorder prediction 8 23 - -
Cla02g01174 289 PANTHER AQUAPORIN PIP-TYPE-RELATED 17 287 - -
Cla02g01174 289 Pfam Major intrinsic protein 37 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g01174 289 TIGRFAM MIP: MIP family channel proteins 49 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g01174 289 SUPERFAMILY Aquaporin-like 37 273 IPR023271 -
Cla02g01174 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 17 287 IPR034294 -
Cla02g01174 289 CDD MIP 45 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g01174 289 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Cla02g01174 289 Gene3D Glycerol uptake facilitator protein. 30 289 IPR023271 -
Cla02g01174 289 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g01174 289 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g01174 289 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g01174 289 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g01174 289 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g01174 289 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g01174 289 MobiDBLite consensus disorder prediction 1 23 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00420 Cla02g01174 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01120 Cla-Chr2:23970895 Cla02g01174 Cla-Chr2:25220123 3.71E-21 dispersed
Cla02g01174 Cla-Chr2:25220123 Cla02g02062 Cla-Chr2:35637260 4.62E-140 dispersed
Cla02g00420 Cla-Chr2:4119110 Cla02g01174 Cla-Chr2:25220123 3.40E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01174 K09872 - mcha:111015529 455.677