Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01178 ATGGAGCAACAGGATTCTGTGGATAAGGAGTCTCTAATAGGTACTTGCAATAGAGATGGTGTTTCTTCAAGTGAAAATATCCACATCACAACTATAAATAATGATGAAACTAGAAGAAAAAATGAGAATACAAGCGACAAACCTAATATTCCACATATATACAGGCAAGATATTGTAAAAAGCAAAGGTAGTGGTATGATAGGGATTGTGACTGAAGTTGCTGGTGATGCTGATTCAGATAGTGATATTACTGATGATGAAGATGAAGATGATGACGGTGAGGATGGTGGGGATGATGATGGTTGTGATGATAATGATGGTGATGGAGAGAACGAAGGTCAAAACAAGGAAAATTATGGTGATGACAGTAATGCTAAAAATACCAACGGAGATAATTATAAGAGCCAACCTCTTCCTGATGACGAAGTTCGAGTCCTTTGGATGGATGAAAGTGAGACAACTCAGAATGTTAATGATTTAACAGTCATTGATAGGGGATTTGTACACGGTGATTTTGTTGCTTCTGTTTCTGATCCAACTGGGCAAGCAGGTGTTGTGGTAGATGTTAATATCTCTGTTGATTTGTTGGCTCCTGATGGATCAATTATGAAAGATATATCATCTAAAAACTTGAAACGTGTGAGAGATTTCACTGTGGGAGATTATGTGGTCCTTGGTCCATGGTTGGGTAGAATTGATGATGTATTGGATAATGTGACTGTGATGTTTGATGATGGCTCTAAGTGTAAGGTCACAAAGGCAGAGCCATTGCGGCTCAAACCAGTTTCTAAGAATATCCTTGAAGATGCAAACTTTCCTTACTATCCTGGTCAGCGTGTAAGGGCGAGTTCAACAGTTTTCAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGCTTGGAAGGCACTGTCACTAAAGTTACAGTTGGTTCAGTGTTCATTTATTGGATAGCATCTGCTGGATATGGACCAGATTCGTCTACCACCCCAGCCGAAGAACAGACTCCAAAGAACTTAAGATTATTAACTTGTTTCTCACATGCAAATTGGCAGTTGGGTGACTGGTGTCTTCTTCCTCCTTCATCATTCTCCGCTGGCCTGACTAAGGACCCATCGCAAACAGAACTTTCTGATTCAGTAAACAACACATTAGATTCTGCACAACCGGTGGGTGCGTGTGATTCAGAGGATGCTGTGCTAGATGAATTAAGTGGGACAACTGAATCCACTGATCTTGATTCCGTCAGTGCATGCGACGGAAATTATAGGAATCCTGTGTATAATAGTTTGCCTGAATCCAGTAGTTCTAGAGCTCTCAAGGAGACTACCCATGAGACTTGGCCTCTACATCGCAAAAAAATTCGGAAAGTTGTCGTCAGGAGAGATAAGAAGGCTAGAAAGAAAGAGGAAAACTTTGAGAGGGCCCTTCTAATTATCAATACTAAGACAAAAGTTGATGTTGCATGGCAGGATGGCGGGACAGAACTTGGACTAGATTCAACAAGCTTGATTCCAATTGATAATCCAGGTGATCATGAATTTGTGCCGGAACAGTACGTGGTTGAGAAGGCCTCTGATAATGATGATGATGTTAGCGAAAGCAGACGAGTTGGAGTTGTGAAAAGTGTTCATGCAAAGGAGCGAACAGCTTGTGTGAGGTGGTTAAAACCAGTCTCCAGGGCAGAGGATCCTCGAGAATTTGACATAGAAGAAATTGTTAGTGTGTATGAGCTAGAGGGGCATCCAGATTATGACTACTGTTACGGTGATGTGGTTGTTCGATTGTCCCCTGTTTCTAATTCTGCAGAGGCAATGTCTTTGGGAATCAATACAGAGGAATTAAAGCAGCAGAATTCAACGGACGAGATGATGAGTTGCTCAGAAAAGGCTTCAGGAAGCCAGAAAATAGAAGATCCATCATGTAGTGATGATTGCATCGACTTCTCAGATCTCTCTTGGGTTGGAAATATAACTGGTCTTAAGAATGGTGATATTGAAGTTACTTGGGCTAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTTGGTCGAGATGATGATGATGAATCAATTGCTGCTGGTAGTGAAGTAAGTAATGGTGGTGCAAGTTGGGAAACAGTTGATGATGATGGAATGGATTCTGTTGAGAATGCCAAGGAGGATATTGAACTACAAGATACTGGTGCAAATTCTGAAGAGGAAGAAAGTGAACAGAATAATTCAGGAAGAAATCTAGCTCTTTCTGTTCCACTTGCTGCACTTCGATTTGTTACTAGATTGGCTGCTGGAATATTCTCACGAGGACCAAGAAATCCAGATTCAATGGATTTGGATTCCCACAGTGACAGTGAGACTCAATCCTTGGAAATTCAAGCTTCAGAGGAAAAAGATTCTGGGCTTCATTCTAGCTCTCTTAAATCCAACTCTTTTGATGCTTCTGATATGAACTCTGATTGTGGAAGAGAAGAGGATAATGTTGCTTCAGAGCCATCAGAAGTGTTAGAATCGGCAAAAGCTTCAAGCAACCTGAGGACTGCAGAATCAGATGCTTCAGCATGCCACGAAGATAGCACCTGCAGCTTCAAAGGCTTTGATATAGCTAAAGATCCTTTGGACCATTATTTTCTTGGTACAAATGGACAAACTAACAATGGAAGGAAATGGCTCAAGAAAATCCAGCAAGATTGGAGTATCCTCCAGAATAATTTGCCAGATGGGATATACGTTCGAGTCTATGAAGACCGTATGGACCTTTTGAGAGCAGTCATTGTTGGGGCCTACGGGACCCCTTACCAAGATGGCCTCTTCTTCTTCGATTTTCACCTCCCACCAGAGTATCCTGACGTTCCGCCAGTAAGCAATACTTGCCTTTTACTCCTTCCACCTATCATAGCATTAGGTCACTTCTACTGTCTGGATACTTCAGCATATTATCATTCAGGTGGGTGGCGGATAAATCCCAATCTTTATGAGGAAGGCAAAGTCTGCCTTAGCCTTCTAAATACTTGGACTGGCAGAGGAAATGAAGTGTGGGATCCGAAATCCTCTAGCATCCTTCAAGTGTTGGTCTCGCTTCAGGGATTAGTGTTGAATTCTAAACCGTATTTTAATGAAGCTGGATATGACAAGCAAGTTGGAACAGCAGAAGGAGAGAAAAATTCCTTGTCGTACAATGAAAACACTTTCTTATTAAACTGCAAGACAATAATGTATCTTATGAGGAAGCCTCCCAAGGACTTTGAAGAACTCGTTAAAGAACATTTCAGGAGGCGTGGATATTTCATCCTGAAGGCCTGTGATGCGTACATGCAAGGTCACTTAATTGGTTCTCTCACAGAAGATGCTTCTATAAGGGAAGAAAGCGATCCCAACTCGACTTCTGTCGGATTTAAGCTTATGCTCACTAAGATTGTTCCAAAGCTCTTCTCATCATTGAACGAAGTCGGAGCTGATTGTCAAGATTTTAAGCATTTTCAACAGTTGTAG 3501 41.45 MEQQDSVDKESLIGTCNRDGVSSSENIHITTINNDETRRKNENTSDKPNIPHIYRQDIVKSKGSGMIGIVTEVAGDADSDSDITDDEDEDDDGEDGGDDDGCDDNDGDGENEGQNKENYGDDSNAKNTNGDNYKSQPLPDDEVRVLWMDESETTQNVNDLTVIDRGFVHGDFVASVSDPTGQAGVVVDVNISVDLLAPDGSIMKDISSKNLKRVRDFTVGDYVVLGPWLGRIDDVLDNVTVMFDDGSKCKVTKAEPLRLKPVSKNILEDANFPYYPGQRVRASSTVFKNSKWLSGLWKPNRLEGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQTPKNLRLLTCFSHANWQLGDWCLLPPSSFSAGLTKDPSQTELSDSVNNTLDSAQPVGACDSEDAVLDELSGTTESTDLDSVSACDGNYRNPVYNSLPESSSSRALKETTHETWPLHRKKIRKVVVRRDKKARKKEENFERALLIINTKTKVDVAWQDGGTELGLDSTSLIPIDNPGDHEFVPEQYVVEKASDNDDDVSESRRVGVVKSVHAKERTACVRWLKPVSRAEDPREFDIEEIVSVYELEGHPDYDYCYGDVVVRLSPVSNSAEAMSLGINTEELKQQNSTDEMMSCSEKASGSQKIEDPSCSDDCIDFSDLSWVGNITGLKNGDIEVTWANGMVSTVGPQAIYVVGRDDDDESIAAGSEVSNGGASWETVDDDGMDSVENAKEDIELQDTGANSEEEESEQNNSGRNLALSVPLAALRFVTRLAAGIFSRGPRNPDSMDLDSHSDSETQSLEIQASEEKDSGLHSSSLKSNSFDASDMNSDCGREEDNVASEPSEVLESAKASSNLRTAESDASACHEDSTCSFKGFDIAKDPLDHYFLGTNGQTNNGRKWLKKIQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPVSNTCLLLLPPIIALGHFYCLDTSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELVKEHFRRRGYFILKACDAYMQGHLIGSLTEDASIREESDPNSTSVGFKLMLTKIVPKLFSSLNEVGADCQDFKHFQQL 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25250381 25259205 - ClCG02G012020.1 Cla02g01178 267304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01178 1166 MobiDBLite consensus disorder prediction 369 392 - -
Cla02g01178 1166 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 980 1165 - -
Cla02g01178 1166 Gene3D Ubiquitin Conjugating Enzyme 855 1149 IPR016135 -
Cla02g01178 1166 SMART ubc_7 895 1075 - -
Cla02g01178 1166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 892 1075 IPR000608 -
Cla02g01178 1166 MobiDBLite consensus disorder prediction 32 46 - -
Cla02g01178 1166 CDD UBCc 895 1068 IPR000608 -
Cla02g01178 1166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 980 1165 - -
Cla02g01178 1166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 41 957 - -
Cla02g01178 1166 MobiDBLite consensus disorder prediction 78 108 - -
Cla02g01178 1166 MobiDBLite consensus disorder prediction 770 854 - -
Cla02g01178 1166 Pfam Ubiquitin-conjugating enzyme 897 1064 IPR000608 -
Cla02g01178 1166 SUPERFAMILY UBC-like 876 1082 IPR016135 -
Cla02g01178 1166 MobiDBLite consensus disorder prediction 695 717 - -
Cla02g01178 1166 MobiDBLite consensus disorder prediction 778 806 - -
Cla02g01178 1166 MobiDBLite consensus disorder prediction 120 135 - -
Cla02g01178 1166 MobiDBLite consensus disorder prediction 8 31 - -
Cla02g01178 1166 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 41 957 - -
Cla02g01178 1166 MobiDBLite consensus disorder prediction 1 54 - -
Cla02g01178 1166 MobiDBLite consensus disorder prediction 839 854 - -
Cla02g01178 1166 MobiDBLite consensus disorder prediction 369 391 - -
Cla02g01178 1166 MobiDBLite consensus disorder prediction 72 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01178 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - csv:101220698 2030.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01178 Cla-Chr2:25250381 Cla11g01764 Cla-Chr11:31262144 2.23E-76 dispersed
Cla02g01178 Cla-Chr2:25250381 Cla01g02248 Cla-Chr1:36416015 1.95E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01178 Cla_Chr02 FPKM 3.883412 3.766262 2.820385 3.402157 7.015714 6.40913 7.097091 2.52463 2.134551 2.581138