Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01184 ATGATTCTGATTGGGTCTACGTTGGGAATGGGAGCCGTCTCCCACAAACCCCACTTCCCGAACAGATTGCGAAGTGGGTTTTACAGCAGAGCTCATTCTAAACACCTCTGTGTTAATGGGGGAGAGGATCGAAACAAGAAAAAGGTCGTCGTCGTCGGCTCCGGTTGGGCTGGCCTTGCCGCTGCTCATCACCTCTGCAGTCAGGGATTTGATACCACCGTTCTTGAACCTGGCAATGATTTTGGTGGTGCCGATATTCATGGAATTCGTGGTTACTGGCATCCCTACAAGAATATATTTGGCCTCGTTGATGAGCTTGGTATTACTCCTTTCACAAACTGGACAGCACCTGCTCATTATTCAGTTGATGGATTGGAGGTAAAATTTCCAATATTCCAAGACCTGCTTCAACTGCCAACTCCTCTCGGAACCTTATTTTATCCAGAATTCACCCAGCTCCCGTTGTTGGATCGGTTAACATCACTTCCTTTGATGGCTGCAGGTGCATTTCTTTCACAGATCTTTGGATTTATTGACTTCGACAATACGGATACGGCATGGAGAAAATATGACTCAATTACCGCCCGGGAGCTATTCAAGCATTTTGGCTGTTCGGGAAAGCTCTATAGTAGTATACTCAATCCATTGCTTCAAGTAGGACTATTTTCTGCAGCTGAGCAGTGCAGTGCTGCTGCAACCTTGGGAATTTTATACTATACTATCCTTGCTCACCAGAAAGATTTCAATCTAGTCTGGTGCCGTGGAACCATTAAAGAAAGGATTTTTCAGCCATGGATGGACTTGCTGGAGAGCAAGGGATGTAGATTTGTTAGGAGCAAAATCACAGATGTGATTGTAGATGATGATACAAATTGTCTCTCAGACATTCTTTGTGGCAGAGAAAGATATGAGGCCAATGCGGTTGTATTTGCTGTTGGAATTTCTGTACTCCAAGAACTCATTCGTAATTCTGCAGCATTATACACAAAAGAGGAGTTCGTCAAGGTTTTAAACTTGAGAAGTGTTGATGTGCTCACTGTTAAGCTTTGGTTTGATAGAAAAGTTAATATTCCAACTGCAAGTAATTCTTGCTCGGCATTGGATAATTCATTTGGGTGGAGTTTCTTTGACTTAAATGCCATTCAAGACGAACACAAAGACGAATCAGTTACAGTCTTACAAGCTGACTTCTATCACGCCAACGAGCTGTTGCCGCTAAATGATGAAGTTATCGTCGAAAAGGTCAAATCTTACCTCTCAATATGTATTAAGGACTTCGAGAATGCCATTGTGGTGAAGAAGGAAATTGGAAAGTTTCCAGAATCATTAACTCACTTCTTTCCTGGTTCATACAAATACATGATCCGCGGCTTTACATCGCTCCCAAATGTGTTCATGGCTGGAGACTGGATCATAAACCGTCACGGTTCGTGGTCGCAGGAGAAAGCATATGTGACTGGCCTTGAAGCTGCAAATAGAGTGGTGGATTTTCTTGAAGAAGGAAGCTTTGCGAAAATTGTACCAGTAGAGGAGGATGAGCCTCATGTGGAGGCTCTTCGTGGTCTCAACAGAAGGATAGATGAGATTAGATCCCAACTCCCATTCAACGGTTTCTTCCTCTAA 1623 43.44 MILIGSTLGMGAVSHKPHFPNRLRSGFYSRAHSKHLCVNGGEDRNKKKVVVVGSGWAGLAAAHHLCSQGFDTTVLEPGNDFGGADIHGIRGYWHPYKNIFGLVDELGITPFTNWTAPAHYSVDGLEVKFPIFQDLLQLPTPLGTLFYPEFTQLPLLDRLTSLPLMAAGAFLSQIFGFIDFDNTDTAWRKYDSITARELFKHFGCSGKLYSSILNPLLQVGLFSAAEQCSAAATLGILYYTILAHQKDFNLVWCRGTIKERIFQPWMDLLESKGCRFVRSKITDVIVDDDTNCLSDILCGRERYEANAVVFAVGISVLQELIRNSAALYTKEEFVKVLNLRSVDVLTVKLWFDRKVNIPTASNSCSALDNSFGWSFFDLNAIQDEHKDESVTVLQADFYHANELLPLNDEVIVEKVKSYLSICIKDFENAIVVKKEIGKFPESLTHFFPGSYKYMIRGFTSLPNVFMAGDWIINRHGSWSQEKAYVTGLEAANRVVDFLEEGSFAKIVPVEEDEPHVEALRGLNRRIDEIRSQLPFNGFFL 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25326193 25330467 + ClCG02G012080.2 Cla02g01184 267310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01184 540 SUPERFAMILY FAD/NAD(P)-binding domain 44 498 IPR036188 -
Cla02g01184 540 Pfam NAD(P)-binding Rossmann-like domain 51 83 - -
Cla02g01184 540 Pfam Flavin containing amine oxidoreductase 300 494 IPR002937 GO:0016491
Cla02g01184 540 Gene3D - 42 497 IPR036188 -
Cla02g01184 540 PANTHER OS04G0560500 PROTEIN 30 516 - -
Cla02g01184 540 PANTHER PROTOPORPHYRINOGEN OXIDASE 30 516 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01184 - - - bhj:120089282 991.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01184 Cla-Chr2:25326193 Cla07g01436 Cla-Chr7:31562144 6.63E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g190 . . . Bda08g00982 . . . . . . . Cma20g00737 . Car20g00639 . . . . . . . . . . . . . . . . . . . . . Lsi10g00509 . Chy11g00241 . . . . . . Bpe05g00298 . . . . Cmo20g00734 . . . . Cpe16g00329 . . . . . . . . Cla02g01184 Cam02g1261 Cec02g1272 Cco02g1310 Clacu02g1243 Cmu02g1210 Cre02g1525 . Csa02g01408 . Cme11g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011350 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 4 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01184 Cla_Chr02 FPKM 23.212572 26.783253 33.218243 34.04454 27.235035 24.3993 28.780912 41.410576 39.426311 42.978157