Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01185 ATGGCGGCGAGTGCATCTTGGCATCCCCAGGAAAATGGGTTCAACGAGATCTGCGGCTTGCTGGAGCAGCAAATTTCTCCTTCTTCAAATCCTGATAAGTCCCAGATTTGGCAGCAACTTCAGCAATACTCTCAGTTCCCCGACTTCAATAATTACCTCGCTTTTATTCTTGCACGAGCCGAGGTTCTTCGAGTTCTCTCTACTTTTGCGGTTTTGTTTGAATGTTCTTGCAATTTCGCTTATTGGGTTTTGATGGGGTTGGGTAAATCAGTTGAGGTTCGACAAGCTGCTGGCTTGCTTTTGAAAAACAACCTTAGAACTGCATACAAGTCGATGACTCCTGCCTTTCAGCAATATATTAAATCCGAATTATTGCCATGTATGGGAGCTGCAGACAGACATATTAGGTCTACAGTCGGGACCATCATCAGTGTCGTTGTTCAGCTAGGGGGAATATTGGGGTGGCCTGAGTTGTTGCAAGCACTTGTAAGATGCTTAGACAGCAAAGACCAGAATCACATGGAAGGTGCTATGGATGCTTTGTCCAAGATTTGTGAAGATATACCTCAAGTGCTTGACTCAGATGTACCTGGATTGCCTGAACGCCCAATCAACATATTTCTTCCTAGATTATTTCAGTTTTTTCAGTCACCACATGCTACATTGCGAAAACTTTCCTTGAGTTCTGTGAATCAATACATCATGCTGATGCCCACTGCGCTATATATATCCATGGACCAGTATCTTCAAGGTTTATTTGTTCTTGCTAATGACCCTACGTCAGAAGTGCGAAAGCTGCCGCACCTGCGGAATGTAATTGAATACATGTTGCAAGTCAATAAGGATGCTGACGAGGAAGTTTCGCTTGAAGCTTGTGAATTTTGGTCTGCATATTGTGATGCCCAATTACCTCCTGAGAACTTAAGAGAGTTCTTGCCACGTTTAATTCCAGCATTATTATCAAATATGGTTTATGCTGATGACGATGAATCACTTCTTGAGGCTGAGGAAGATGGATCTCTTCCAGACCGAGAGCAGGATCTAAAACCCCGTTTCCATTCATCAAGGTTACATGGGTCAGATAATGCAGAAGATGATGATGATGACATTGTAAATATATGGAACTTGCGCAAATGCAGTGCTGCAGCTCTTGATATTCTCTCAAATGTGTTTGGGGATGAAATTCTTCCTATGTTGATGCCCATTGTTCAGTCGGGCAAAAGATCTTGTATTTTCCCCTCTTCCAGTTATGTCAATTTATCCACTAATGGTGATGAAGCCTGGAAAGAGAGGGAAGCTGCTGTATTGGCTCTTGGTGCCATAGCTGAAGGTTGCATTAGTGGACTTTATCCTCATCTGCCTGAGGTGATATGTTATATTGTTACATTTCTCATTCCTCTTTTAGATGATAAATTTCCTCTAATAAGGAGTATATCATGTTGGACACTTTCTCGTTTCAGCAAGTTCATTGTGCAGGTATGTGTTCGTGAGTGTTTAGATTATTTTATTTTGAATATTTATGTAAATTTTGTACAAACTACTGTACTTCTTTTTCTAAATTCTATGGGCATTGGAAATCAGAAAGGTTACGAACAATTTGATAAGGTTCTCATGGGACTTCTACGAAGATTATTGGACAATAACAAGAGGGTGCAAGAAGCTGCTTGTTCTGCTTTCGCAACGCTGGAGGAGGAAGCTGCCGAGGAGTTGGCGCCACATTTGAAAAATATATTACAACACCTAATATGTGCTTTTGGAAAATATCAGAGACGAAATCTACGGATAGTGTATGACGCTATTGGAACCTTAGCAGATGCTGTTGGAGGGGAGCTAAATCAGCCTGTTTATCTTGATATTCTCATGCCACCATTAATTGCCAAATGGCAGCAACTTTCGAACTCAGACAAAGATCTTTTCCCACTGTTGGAGTGCTTCACATCTATAGCACAGGTCTCTATTCGTGTTTTGGCTTATTGGCTCATTGTTTTTTTATGCGCTTTGGGGACTGGATTTGCCCAATTTGCTCAGCCTGTGTATCAGAGATGCATAAGCATCATCCAGACCCAACAAATGGCTAAGGTCGATCCTGTTTCTGCTGGGGTTCAGTATGATAAAGAGTTCGTTGTGTGCTGTCTTGATCTTCTTTCAGGACTCGCAGAAGGTCTTGGCAGTGGAATTGAAAGTTTGGTTTCTCAAAGCAATCTGAGGGACTTGCTCTTGCAATGTTGCATGGATGAAGCTTCTGATGTCCGACAGAGTGCATTTGCATTGCTTGGGGATCTTGGAAGAGTATGCCACGTCCATTTACAACCGCGTTTATCAGAATTTCTTACCGCTGCAGCAAAGCAACTGGATACTCCTAAGCTGAAGGAAATTGTTTCTGTGGCAAACAATGCCTGCTGGGCAATTGGAGAATTAGCTGTTAAGGTATGTGCAGACTTTTCATACACTCACAGATTGTCAGATATTGAGCTTGTATGGATACATGTGTTCACACATTCCTCTTATTTTCAGTATAATGATCTATTGCATCCGATGGTACACCAAGAAATTTCTCCTGTCGTTTTGACAGTGATTTCAAGCTTGGTCCCGATTCTCCAACATGCACAGGTGATGGTCCCTTTCTTTTGCACTAGCATAGTTCCGTTCGATGAGAGAAAAGGCGAGGAGCTAAATAAATCTCTGGTAGAAAACAGTGCAATTACACTTGGAAGGATTGCATGGGTTTGCCCTCAGCTAGTGTCACCACATATGGAACATTTCATGCAACCATGGTGCACTGCTTTATCCATGATACGTGATGATGTAGAAAAGGAGGATGCTTTCCGAGGTCTTTGTGCTCTGGCTAAATCAAATCCATCAGGGGCACTAAATTCACTTGCTTATATGTGCAAAGCTATTGCCAGTTGGCATGAAATAAGGAGTCAAGATCTTCATAATGATGTATGCCAGGTTCTGCATGGTTATAAGCAGGTTTTTGGATTGACCATTTTTATGCTGAGAAATGGTGGGTGGGACCAGTGTATTTCTTCTCTAGAACCATCTGTGAAGGAAAAACTGTCAAAATATCAAGTATAG 3078 41.85 MAASASWHPQENGFNEICGLLEQQISPSSNPDKSQIWQQLQQYSQFPDFNNYLAFILARAEVLRVLSTFAVLFECSCNFAYWVLMGLGKSVEVRQAAGLLLKNNLRTAYKSMTPAFQQYIKSELLPCMGAADRHIRSTVGTIISVVVQLGGILGWPELLQALVRCLDSKDQNHMEGAMDALSKICEDIPQVLDSDVPGLPERPINIFLPRLFQFFQSPHATLRKLSLSSVNQYIMLMPTALYISMDQYLQGLFVLANDPTSEVRKLPHLRNVIEYMLQVNKDADEEVSLEACEFWSAYCDAQLPPENLREFLPRLIPALLSNMVYADDDESLLEAEEDGSLPDREQDLKPRFHSSRLHGSDNAEDDDDDIVNIWNLRKCSAAALDILSNVFGDEILPMLMPIVQSGKRSCIFPSSSYVNLSTNGDEAWKEREAAVLALGAIAEGCISGLYPHLPEVICYIVTFLIPLLDDKFPLIRSISCWTLSRFSKFIVQVCVRECLDYFILNIYVNFVQTTVLLFLNSMGIGNQKGYEQFDKVLMGLLRRLLDNNKRVQEAACSAFATLEEEAAEELAPHLKNILQHLICAFGKYQRRNLRIVYDAIGTLADAVGGELNQPVYLDILMPPLIAKWQQLSNSDKDLFPLLECFTSIAQVSIRVLAYWLIVFLCALGTGFAQFAQPVYQRCISIIQTQQMAKVDPVSAGVQYDKEFVVCCLDLLSGLAEGLGSGIESLVSQSNLRDLLLQCCMDEASDVRQSAFALLGDLGRVCHVHLQPRLSEFLTAAAKQLDTPKLKEIVSVANNACWAIGELAVKVCADFSYTHRLSDIELVWIHVFTHSSYFQYNDLLHPMVHQEISPVVLTVISSLVPILQHAQVMVPFFCTSIVPFDERKGEELNKSLVENSAITLGRIAWVCPQLVSPHMEHFMQPWCTALSMIRDDVEKEDAFRGLCALAKSNPSGALNSLAYMCKAIASWHEIRSQDLHNDVCQVLHGYKQVFGLTIFMLRNGGWDQCISSLEPSVKEKLSKYQV 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25360426 25379775 + ClCG02G012090.2 Cla02g01185 267311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01185 1025 PANTHER TRANSPORTIN 1 ISOFORM 1 7 63 - -
Cla02g01185 1025 MobiDBLite consensus disorder prediction 335 363 - -
Cla02g01185 1025 SUPERFAMILY ARM repeat 7 994 IPR016024 -
Cla02g01185 1025 Pfam HEAT repeat 737 765 IPR000357 GO:0005515
Cla02g01185 1025 Gene3D - 3 1025 IPR011989 -
Cla02g01185 1025 Pfam Importin-beta N-terminal domain 83 129 IPR001494 GO:0006886|GO:0031267
Cla02g01185 1025 PANTHER IMPORTIN BETA 7 63 IPR040122 GO:0006606
Cla02g01185 1025 MobiDBLite consensus disorder prediction 337 363 - -
Cla02g01185 1025 Pfam HEAT-like repeat 428 485 - -
Cla02g01185 1025 PANTHER IMPORTIN BETA 87 504 IPR040122 GO:0006606
Cla02g01185 1025 PANTHER IMPORTIN BETA 847 1023 IPR040122 GO:0006606
Cla02g01185 1025 PANTHER IMPORTIN BETA 522 815 IPR040122 GO:0006606
Cla02g01185 1025 PANTHER TRANSPORTIN 1 ISOFORM 1 87 504 - -
Cla02g01185 1025 PANTHER TRANSPORTIN 1 ISOFORM 1 847 1023 - -
Cla02g01185 1025 PANTHER TRANSPORTIN 1 ISOFORM 1 522 815 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01185 K18752 TNPO1, IPO2, KPNB2; transportin-1 - csv:101222100 1550.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00035 Cla-Chr1:266306 Cla02g01185 Cla-Chr2:25360426 3.44E-18 dispersed
Cla02g01185 Cla-Chr2:25360426 Cla02g02355 Cla-Chr2:38601506 3.71E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g205 . Blo15g00387 Bda06g00473 Bda08g00980 Bpe07g00709 . . . . . Cma02g00273 Cma20g00736 . Car20g00638 . . . . . . . . . . . . . . . . . . . Cone3ag0971 Cone10ag1175 Lsi10g00510 . Chy11g00239 . . . . . . Bpe05g00300 . . . Cmo02g00270 Cmo20g00733 . . . . Cpe16g00330 Cpe05g01359 Bhi10g01809 . . . . . . Cla02g01185 Cam02g1263 Cec02g1274 Cco02g1311 Clacu02g1246 Cmu02g1212 Cre02g1527 . Csa02g01409 . Cme11g00361
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005972 1 2 3 0 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 0 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01185 Cla_Chr02 FPKM 26.921856 28.21682 51.395977 53.455372 35.14193 33.381729 36.374271 30.687052 30.325119 32.233791