Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01189 ATGAGAGCTCATCGTTTGAGCTTCTTCACTTCCTTTATATTTTTATTCCCTACATTCATCACAGCCACAGGCTTCACGCTTCTCCACGATTCCTCCATTTCCTACAGGAGAATTCTGCATCAGCCGCTCTTTCCGGTTGCCTCTGAGCCGCCGCCTGACATTGACTTGTCTCCACCGCCCCCGCCGCCGGATTCTCCTTCCGACGATCAGCCGTTTTTCCATGAGCTGCCCACCAGTCCAGATCAGAGTCAACCTCCTCCTTCCTCATCTAATGGAACTATGCCAATCCCTGCCTCTACGGCGCAACCGTCCAAGCCCACCAAGACTGTTGCAATTGCCATTTCCGTTGGGATTGTGACTTTGGGGATGCTTTCAGCTCTCGCTTTCTTTTTGTATCGTCACCGTGCGAAGCATCCGGGGGAGTCGCAGAAGCTTGTTGGAGGGAATAATCCGGAGAGATTTGTGGAGGACTCGAGAGCGCCGCCCTCGAGTTTTTTCTATATCGGAACTGTTGAGCCGAGTCAGAGCTCTATTGTGGAGCAGAATGGTGCCAATGGTGCTAACAGTTCGCCTTATCGCAAGCTGAATTCGATTAAGAGGTCGGATCGGTATCGTCCGAGTCCAGAGTTGCAGCCACTGCCGCCACTGCCAAAACCACCGGTGGCTATGTCGCCTCCGGCTTTGTCGTCTTCCGATGAGGAAAGCCAGGACACGGCATTTCATACTCCGCAATGCTCGTCGATTGTTAGTCACGATGATGGCTATTTTTCACCGGCTTCTCGTCGGAGTAATTCGGTTAAGAGCTGTTCCACGGCAAGTTTCAAGAATGACCATATGAATTCCAATCCTCCTCCCATTCCTCATTCCAAAAGGACGTCTCCTAAATCGAGATTTTCGGTTTCTTCGACGAAGCGCACTTCGTCTCAGCCTCAGCCTCAGCCTCAGCCACCGCCGCCGCCGCCTCCTCCACCGCGTCCGTTTGATGATTTTCGCGAAATTCCGAATTCGAAAGAGACAATGCCTTTCTCGTCCACGAGACCTAAATTTTCGAAGCCTCCGCCTCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATTCAACCACATTTCCTCAAGTTCCGCAACCTGCTGTAGCTCCACCTCCACCTCCACCTCCGCCTCCGCCGCCCCCACCCCCACCCCCACCCCCACCCCCACCTCCACCTCCGCGACTACCGGCGCGTCCGGTCTCCTATTCAACGCCACAAAAACTAGGGTTATCAGAAACCAGAATGTCGGCAGTCACTCCTCCAGACTCCTCTAAGTCACAATCCTACTCAACAGCGAGGTCAAACTCTTCCCCGAAATCCACACCGAGTTCTGTGACAACAAATTCTGCTAAAGAAGACGTTGCCCCGAGGATTAATTCTATGGAGAGGCTCGAAGCAGAGGATGCAGAAGGTGCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACCTCAGACCGAGCTACAGTTTGGGATCAACTTAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAGACACTGTTCGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAGGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAATAGGGTATTGGACCCAAAAAAGTCTCAGAACATAGCAATACTTCTAAGAGCACTTAATGTCACGCGCGATGAGGTGATCGAAGCTCTTCAAGATGGTGAGTGCTTTCTATATTGCTGTCCAATTATGAATTCTTTTCATAATTTGGGATCTGTCATACGGAAGGATTTGCTCATAATCATGGCTGTAATGACTATTTTTGATAATAAGCATATGTTTGAAGGAATGACCACACTGCCATCATTATCAGCATTAGAATATTGGTCATCATTTTGCATCCTTATTTTAGTTGATGCTGTTTTTATTCATTCCCTGGGCATTATTATCGATGTTATATTCTTTCCTGCCATTTTTGCTATTCTTCCTGTCACACCTACGCATAATTGCTTCACTAGTTCTAGATGGCCTAGGGAAAGTGCCTTGCTCATTAGATGGAGATTCTTTGCAATACAGAGTTTAGCTGGCGCTATGCGACCTTACTTAAACATGATCTATTCTATAAGTCGTAGAATAGTGTTATCGAGTTCCAAAAATCTGAGTCATAGTGCATTGGAGCATGGAAACCCAGAAGGCTTTGGTACTGAGCTCTTAGAAACTCTTGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTCAGAGAGTACTGTGGTGATGTTTCAAAATTAGGGACTGCAGAAAGATTTCTCAAGGCAGTGCTTGAAGTTCCATTTGCCTTTAGAAGAGTTGAGGCAATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTAAGGAAATCTTTCCAAACCCTTGAGGGTGCAAGTGAAGAATTGAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCGGTTCTTAAGACAGGAAATAGGATGAATGTTGGTACGAATCGTGGTGATGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTCGATATAAAGGGAACGGATGGGAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATCATCAGATCAGAAGGTGGTGCTGATTCAACTAATGACAACCTTCAACCCCGTTCGCAAGCTAAAATCGAGGATGAATTCAGAAAGCAGGGCTTGCAAGTTGTGGCTGGACTAAGCAGAGACCTCACCAATGTAAAAAAAGCGGCAGGGATGGACTCAGACGTCTTGAGCAGTTATGTCACAAAGCTCGAGATGGGGCTTGAAAAAGTAAGGTTGGTTTTGCAATTTGAAAGGCCAGGAATGCAGGGAAAATTCTTCAACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAGGAAATAGTCAGGATTAAAGCTGACGAAAGGCAAGCTTTATCGCTTGTGAAAGCAGTCACAGAGTATTTCCATGGTGATGCTGCTAAGGAGGAAGCACATCCCTTCCGAATATTCATGATCGTTCGGGATTTCCTAACTGTACTGGATCAAGTATGCAAAGAAGTTGGGAGAATGCAAGACGGAGTAATGGTTGGTGCTGCCAGATCCTTTCGGATATCTGCTACAGCCTCACTCCCAGTCCTCAGCAGGTATAACGTCAGACACGACCGAAGCTCCGACGAGGATAGCTCATCTCCATGA 3231 46.8 MRAHRLSFFTSFIFLFPTFITATGFTLLHDSSISYRRILHQPLFPVASEPPPDIDLSPPPPPPDSPSDDQPFFHELPTSPDQSQPPPSSSNGTMPIPASTAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGNNPERFVEDSRAPPSSFFYIGTVEPSQSSIVEQNGANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPVAMSPPALSSSDEESQDTAFHTPQCSSIVSHDDGYFSPASRRSNSVKSCSTASFKNDHMNSNPPPIPHSKRTSPKSRFSVSSTKRTSSQPQPQPQPPPPPPPPPRPFDDFREIPNSKETMPFSSTRPKFSKPPPPPNLALLQTISNSTTFPQVPQPAVAPPPPPPPPPPPPPPPPPPPPPPPPRLPARPVSYSTPQKLGLSETRMSAVTPPDSSKSQSYSTARSNSSPKSTPSSVTTNSAKEDVAPRINSMERLEAEDAEGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGECFLYCCPIMNSFHNLGSVIRKDLLIIMAVMTIFDNKHMFEGMTTLPSLSALEYWSSFCILILVDAVFIHSLGIIIDVIFFPAIFAILPVTPTHNCFTSSRWPRESALLIRWRFFAIQSLAGAMRPYLNMIYSISRRIVLSSSKNLSHSALEHGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDVSKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDNLQPRSQAKIEDEFRKQGLQVVAGLSRDLTNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFERPGMQGKFFNSMKTFLKEAEEEIVRIKADERQALSLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTVLDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDRSSDEDSSSP 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25442545 25447064 + ClCG02G012130.2 Cla02g01189 267315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01189 1076 MobiDBLite consensus disorder prediction 310 329 - -
Cla02g01189 1076 PANTHER FORMIN-RELATED 19 581 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cla02g01189 1076 PANTHER FORMIN-RELATED 728 1076 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cla02g01189 1076 MobiDBLite consensus disorder prediction 49 68 - -
Cla02g01189 1076 Gene3D Formin, FH2 domain 470 583 IPR042201 -
Cla02g01189 1076 Pfam Formin Homology 2 Domain 729 1025 IPR015425 -
Cla02g01189 1076 Pfam Formin Homology 2 Domain 481 580 IPR015425 -
Cla02g01189 1076 PANTHER FORMIN-LIKE PROTEIN 6 19 581 - -
Cla02g01189 1076 PANTHER FORMIN-LIKE PROTEIN 6 728 1076 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 228 309 - -
Cla02g01189 1076 SMART it6_source 476 1040 IPR015425 -
Cla02g01189 1076 ProSiteProfiles Formin homology-2 (FH2) domain profile. 476 1051 IPR015425 -
Cla02g01189 1076 Coils Coil 972 992 - -
Cla02g01189 1076 Gene3D Formin, FH2 domain 714 1040 IPR042201 -
Cla02g01189 1076 SUPERFAMILY Formin homology 2 domain (FH2 domain) 393 590 - -
Cla02g01189 1076 PRINTS Proline rich extensin signature 200 212 - -
Cla02g01189 1076 PRINTS Proline rich extensin signature 281 297 - -
Cla02g01189 1076 PRINTS Proline rich extensin signature 214 230 - -
Cla02g01189 1076 PRINTS Proline rich extensin signature 309 326 - -
Cla02g01189 1076 PRINTS Proline rich extensin signature 369 394 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 466 481 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 49 106 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 85 106 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 208 224 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 414 464 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 198 481 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 374 409 - -
Cla02g01189 1076 SUPERFAMILY Formin homology 2 domain (FH2 domain) 729 1036 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01189 - - - cmo:103497354 642.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01189 Cla-Chr2:25442545 Cla07g00231 Cla-Chr7:2572105 6.80E-15 dispersed
Cla07g00225 Cla-Chr7:2464641 Cla02g01189 Cla-Chr2:25442545 9.47E-27 dispersed
Cla02g00812 Cla-Chr2:10752978 Cla02g01189 Cla-Chr2:25442545 1.39E-20 transposed
Cla03g01635 Cla-Chr3:32236458 Cla02g01189 Cla-Chr2:25442545 3.10E-23 transposed
Cla05g01545 Cla-Chr5:25829697 Cla02g01189 Cla-Chr2:25442545 6.03E-22 transposed
Cla05g02507 Cla-Chr5:36432735 Cla02g01189 Cla-Chr2:25442545 1.73E-18 transposed
Cla08g00895 Cla-Chr8:21415552 Cla02g01189 Cla-Chr2:25442545 5.01E-18 transposed
Cla11g00087 Cla-Chr11:1122841 Cla02g01189 Cla-Chr2:25442545 1.19E-32 transposed
Cla01g01710 Cla-Chr1:32046639 Cla02g01189 Cla-Chr2:25442545 5.28E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla07g00231 . 181 996 FH2 protein (formin) Gene Family AT3G25500 50.1 5.5e-181 632.1
Cla11g00087 . 468 934 FH2 protein (formin) Gene Family AT3G25500 65.8 4.1e-160 562.8
Cla03g01635 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.2e-104 377.1
Cla07g00231 . 588 1013 FH2 protein (formin) Gene Family AT2G43800 56.5 5.6e-126 449.1
Cla02g00812 CCT 441 933 FH2 protein (formin) Gene Family AT5G54650 59.2 4.9e-154 542.3
Cla11g00087 . 481 916 FH2 protein (formin) Gene Family AT5G67470 59.3 3.7e-125 446.4
Cla07g00231 . 580 1013 FH2 protein (formin) Gene Family AT5G67470 55.3 1.4e-121 434.5
Cla03g01635 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 9.4e-105 378.6
Cla05g02507 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.1 7.6e-126 448.7
Cla02g01189 . 730 1033 FH2 protein (formin) Gene Family AT5G48360 52.3 5.7e-74 276.2
Cla07g00225 . 1 1476 FH2 protein (formin) Gene Family AT1G31810 59.8 0.0e+00 1153.7
Cla06g01227 . 1 1245 FH2 protein (formin) Gene Family AT1G31810 51.0 1.5e-241 833.6
Cla06g01570 CCT 1064 1388 FH2 protein (formin) Gene Family AT5G07650 74.2 9.7e-130 461.5
Cla04g01181 CCT 980 1304 FH2 protein (formin) Gene Family AT5G07650 67.4 9.4e-117 418.3
Cla06g01227 . 935 1254 FH2 protein (formin) Gene Family AT5G07650 62.9 1.1e-109 394.8
Cla05g01683 . 1112 1437 FH2 protein (formin) Gene Family AT5G07650 64.4 1.6e-108 391.0
Cla07g00225 . 1131 1473 FH2 protein (formin) Gene Family AT5G07650 57.7 1.3e-105 381.3
Cla06g01570 CCT 909 1381 FH2 protein (formin) Gene Family AT5G07770 56.8 2.1e-129 459.9
Cla04g01181 CCT 903 1304 FH2 protein (formin) Gene Family AT5G07770 61.0 2.4e-125 446.4
Cla05g01683 . 1036 1429 FH2 protein (formin) Gene Family AT5G07770 59.0 5.4e-117 418.7
Cla06g01227 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 4.5e-116 415.6
Cla07g00225 . 1067 1467 FH2 protein (formin) Gene Family AT5G07770 53.7 1.0e-112 404.4
Cla05g01683 . 1028 1437 FH2 protein (formin) Gene Family AT3G32400 75.6 5.6e-168 587.8
Cla06g01227 . 865 1255 FH2 protein (formin) Gene Family AT3G32400 69.2 2.9e-148 522.3
Cla07g00225 . 1067 1472 FH2 protein (formin) Gene Family AT3G32400 63.7 3.5e-138 488.8
Cla06g01570 CCT 909 1388 FH2 protein (formin) Gene Family AT3G32400 54.2 5.5e-131 464.9
Cla04g01181 CCT 873 1307 FH2 protein (formin) Gene Family AT3G32400 56.4 5.1e-129 458.4
Cla05g01683 . 1 1437 FH2 protein (formin) Gene Family AT2G25050 50.1 0.0e+00 1137.5
Cla06g01227 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 53.6 2.1e-290 995.7
Cla06g01570 CCT 910 1388 FH2 protein (formin) Gene Family AT5G07780 52.0 2.4e-112 402.9
Cla04g01181 CCT 904 1307 FH2 protein (formin) Gene Family AT5G07780 56.2 1.7e-110 396.7
Cla05g01683 . 1037 1430 FH2 protein (formin) Gene Family AT5G07780 53.8 1.5e-101 367.1
Cla06g01227 . 865 1254 FH2 protein (formin) Gene Family AT5G07780 53.8 1.9e-101 366.7
Cla07g00225 . 1068 1468 FH2 protein (formin) Gene Family AT5G07780 50.6 3.0e-99 359.4
Cla06g01570 CCT 1067 1395 FH2 protein (formin) Gene Family AT5G07760 74.3 9.9e-128 454.9
Cla04g01181 CCT 979 1307 FH2 protein (formin) Gene Family AT5G07760 66.7 2.1e-114 410.6
Cla06g01227 . 934 1254 FH2 protein (formin) Gene Family AT5G07760 64.7 5.5e-110 396.0
Cla05g01683 . 1111 1446 FH2 protein (formin) Gene Family AT5G07760 63.4 8.7e-108 388.7
Cla07g00225 . 1141 1473 FH2 protein (formin) Gene Family AT5G07760 58.1 1.4e-102 371.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01189 Cla_Chr02 FPKM 3.490723 3.638294 2.882735 3.71294 5.4744 6.027656 6.04267 3.718638 3.49641 4.65446