Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01189 ATGAGAGCTCATCGTTTGAGCTTCTTCACTTCCTTTATATTTTTATTCCCTACATTCATCACAGCCACAGGCTTCACGCTTCTCCACGATTCCTCCATTTCCTACAGGAGAATTCTGCATCAGCCGCTCTTTCCGGTTGCCTCTGAGCCGCCGCCTGACATTGACTTGTCTCCACCGCCCCCGCCGCCGGATTCTCCTTCCGACGATCAGCCGTTTTTCCATGAGCTGCCCACCAGTCCAGATCAGAGTCAACCTCCTCCTTCCTCATCTAATGGAACTATGCCAATCCCTGCCTCTACGGCGCAACCGTCCAAGCCCACCAAGACTGTTGCAATTGCCATTTCCGTTGGGATTGTGACTTTGGGGATGCTTTCAGCTCTCGCTTTCTTTTTGTATCGTCACCGTGCGAAGCATCCGGGGGAGTCGCAGAAGCTTGTTGGAGGGAATAATCCGGAGAGATTTGTGGAGGACTCGAGAGCGCCGCCCTCGAGTTTTTTCTATATCGGAACTGTTGAGCCGAGTCAGAGCTCTATTGTGGAGCAGAATGGTGCCAATGGTGCTAACAGTTCGCCTTATCGCAAGCTGAATTCGATTAAGAGGTCGGATCGGTATCGTCCGAGTCCAGAGTTGCAGCCACTGCCGCCACTGCCAAAACCACCGGTGGCTATGTCGCCTCCGGCTTTGTCGTCTTCCGATGAGGAAAGCCAGGACACGGCATTTCATACTCCGCAATGCTCGTCGATTGTTAGTCACGATGATGGCTATTTTTCACCGGCTTCTCGTCGGAGTAATTCGGTTAAGAGCTGTTCCACGGCAAGTTTCAAGAATGACCATATGAATTCCAATCCTCCTCCCATTCCTCATTCCAAAAGGACGTCTCCTAAATCGAGATTTTCGGTTTCTTCGACGAAGCGCACTTCGTCTCAGCCTCAGCCTCAGCCTCAGCCACCGCCGCCGCCGCCTCCTCCACCGCGTCCGTTTGATGATTTTCGCGAAATTCCGAATTCGAAAGAGACAATGCCTTTCTCGTCCACGAGACCTAAATTTTCGAAGCCTCCGCCTCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATTCAACCACATTTCCTCAAGTTCCGCAACCTGCTGTAGCTCCACCTCCACCTCCACCTCCGCCTCCGCCGCCCCCACCCCCACCCCCACCCCCACCCCCACCTCCACCTCCGCGACTACCGGCGCGTCCGGTCTCCTATTCAACGCCACAAAAACTAGGGTTATCAGAAACCAGAATGTCGGCAGTCACTCCTCCAGACTCCTCTAAGTCACAATCCTACTCAACAGCGAGGTCAAACTCTTCCCCGAAATCCACACCGAGTTCTGTGACAACAAATTCTGCTAAAGAAGACGTTGCCCCGAGGATTAATTCTATGGAGAGGCTCGAAGCAGAGGATGCAGAAGGTGCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACCTCAGACCGAGCTACAGTTTGGGATCAACTTAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAGACACTGTTCGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAGGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAATAGGGTATTGGACCCAAAAAAGTCTCAGAACATAGCAATACTTCTAAGAGCACTTAATGTCACGCGCGATGAGGTGATCGAAGCTCTTCAAGATGGTGAGTGCTTTCTATATTGCTGTCCAATTATGAATTCTTTTCATAATTTGGGATCTGTCATACGGAAGGATTTGCTCATAATCATGGCTGTAATGACTATTTTTGATAATAAGCATATGTTTGAAGGAATGACCACACTGCCATCATTATCAGCATTAGAATATTGGTCATCATTTTGCATCCTTATTTTAGTTGATGCTGTTTTTATTCATTCCCTGGGCATTATTATCGATGTTATATTCTTTCCTGCCATTTTTGCTATTCTTCCTGTCACACCTACGCATAATTGCTTCACTAGTTCTAGATGGCCTAGGGAAAGTGCCTTGCTCATTAGATGGAGATTCTTTGCAATACAGAGTTTAGCTGGCGCTATGCGACCTTACTTAAACATGATCTATTCTATAAGTCGTAGAATAGTGTTATCGAGTTCCAAAAATCTGAGTCATAGTGCATTGGAGCATGGAAACCCAGAAGGCTTTGGTACTGAGCTCTTAGAAACTCTTGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTCAGAGAGTACTGTGGTGATGTTTCAAAATTAGGGACTGCAGAAAGATTTCTCAAGGCAGTGCTTGAAGTTCCATTTGCCTTTAGAAGAGTTGAGGCAATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTAAGGAAATCTTTCCAAACCCTTGAGGGTGCAAGTGAAGAATTGAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCGGTTCTTAAGACAGGAAATAGGATGAATGTTGGTACGAATCGTGGTGATGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTCGATATAAAGGGAACGGATGGGAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATCATCAGATCAGAAGGTGGTGCTGATTCAACTAATGACAACCTTCAACCCCGTTCGCAAGCTAAAATCGAGGATGAATTCAGAAAGCAGGGCTTGCAAGTTGTGGCTGGACTAAGCAGAGACCTCACCAATGTAAAAAAAGCGGCAGGGATGGACTCAGACGTCTTGAGCAGTTATGTCACAAAGCTCGAGATGGGGCTTGAAAAAGTAAGGTTGGTTTTGCAATTTGAAAGGCCAGGAATGCAGGGAAAATTCTTCAACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAGGAAATAGTCAGGATTAAAGCTGACGAAAGGCAAGCTTTATCGCTTGTGAAAGCAGTCACAGAGTATTTCCATGGTGATGCTGCTAAGGAGGAAGCACATCCCTTCCGAATATTCATGATCGTTCGGGATTTCCTAACTGTACTGGATCAAGTATGCAAAGAAGTTGGGAGAATGCAAGACGGAGTAATGGTTGGTGCTGCCAGATCCTTTCGGATATCTGCTACAGCCTCACTCCCAGTCCTCAGCAGGTATAACGTCAGACACGACCGAAGCTCCGACGAGGATAGCTCATCTCCATGA 3231 46.8 MRAHRLSFFTSFIFLFPTFITATGFTLLHDSSISYRRILHQPLFPVASEPPPDIDLSPPPPPPDSPSDDQPFFHELPTSPDQSQPPPSSSNGTMPIPASTAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGNNPERFVEDSRAPPSSFFYIGTVEPSQSSIVEQNGANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPVAMSPPALSSSDEESQDTAFHTPQCSSIVSHDDGYFSPASRRSNSVKSCSTASFKNDHMNSNPPPIPHSKRTSPKSRFSVSSTKRTSSQPQPQPQPPPPPPPPPRPFDDFREIPNSKETMPFSSTRPKFSKPPPPPNLALLQTISNSTTFPQVPQPAVAPPPPPPPPPPPPPPPPPPPPPPPPRLPARPVSYSTPQKLGLSETRMSAVTPPDSSKSQSYSTARSNSSPKSTPSSVTTNSAKEDVAPRINSMERLEAEDAEGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGECFLYCCPIMNSFHNLGSVIRKDLLIIMAVMTIFDNKHMFEGMTTLPSLSALEYWSSFCILILVDAVFIHSLGIIIDVIFFPAIFAILPVTPTHNCFTSSRWPRESALLIRWRFFAIQSLAGAMRPYLNMIYSISRRIVLSSSKNLSHSALEHGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDVSKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDNLQPRSQAKIEDEFRKQGLQVVAGLSRDLTNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFERPGMQGKFFNSMKTFLKEAEEEIVRIKADERQALSLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTVLDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDRSSDEDSSSP 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25442545 25447064 + ClCG02G012130.2 Cla02g01189 267315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01189 1076 MobiDBLite consensus disorder prediction 310 329 - -
Cla02g01189 1076 PANTHER FORMIN-RELATED 19 581 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cla02g01189 1076 PANTHER FORMIN-RELATED 728 1076 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cla02g01189 1076 MobiDBLite consensus disorder prediction 49 68 - -
Cla02g01189 1076 Gene3D Formin, FH2 domain 470 583 IPR042201 -
Cla02g01189 1076 Pfam Formin Homology 2 Domain 729 1025 IPR015425 -
Cla02g01189 1076 Pfam Formin Homology 2 Domain 481 580 IPR015425 -
Cla02g01189 1076 PANTHER FORMIN-LIKE PROTEIN 6 19 581 - -
Cla02g01189 1076 PANTHER FORMIN-LIKE PROTEIN 6 728 1076 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 228 309 - -
Cla02g01189 1076 SMART it6_source 476 1040 IPR015425 -
Cla02g01189 1076 ProSiteProfiles Formin homology-2 (FH2) domain profile. 476 1051 IPR015425 -
Cla02g01189 1076 Coils Coil 972 992 - -
Cla02g01189 1076 Gene3D Formin, FH2 domain 714 1040 IPR042201 -
Cla02g01189 1076 SUPERFAMILY Formin homology 2 domain (FH2 domain) 393 590 - -
Cla02g01189 1076 PRINTS Proline rich extensin signature 200 212 - -
Cla02g01189 1076 PRINTS Proline rich extensin signature 281 297 - -
Cla02g01189 1076 PRINTS Proline rich extensin signature 214 230 - -
Cla02g01189 1076 PRINTS Proline rich extensin signature 309 326 - -
Cla02g01189 1076 PRINTS Proline rich extensin signature 369 394 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 466 481 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 49 106 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 85 106 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 208 224 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 414 464 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 198 481 - -
Cla02g01189 1076 MobiDBLite consensus disorder prediction 374 409 - -
Cla02g01189 1076 SUPERFAMILY Formin homology 2 domain (FH2 domain) 729 1036 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01189 Cla-Chr2:25442545 Cla07g00231 Cla-Chr7:2572105 6.80E-15 dispersed
Cla07g00225 Cla-Chr7:2464641 Cla02g01189 Cla-Chr2:25442545 9.47E-27 dispersed
Cla02g00812 Cla-Chr2:10752978 Cla02g01189 Cla-Chr2:25442545 1.39E-20 transposed
Cla03g01635 Cla-Chr3:32236458 Cla02g01189 Cla-Chr2:25442545 3.10E-23 transposed
Cla05g01545 Cla-Chr5:25829697 Cla02g01189 Cla-Chr2:25442545 6.03E-22 transposed
Cla05g02507 Cla-Chr5:36432735 Cla02g01189 Cla-Chr2:25442545 1.73E-18 transposed
Cla08g00895 Cla-Chr8:21415552 Cla02g01189 Cla-Chr2:25442545 5.01E-18 transposed
Cla11g00087 Cla-Chr11:1122841 Cla02g01189 Cla-Chr2:25442545 1.19E-32 transposed
Cla01g01710 Cla-Chr1:32046639 Cla02g01189 Cla-Chr2:25442545 5.28E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01189 - - cmo:103497354 642.884