Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01198 ATGAAAGAGAAAAATGAAGAGAGAAAATTAAAGCAATTCAAAGGGATAAGGATGAGAAAATGGGGAAAATGGGTTGCCGAAATCCGAGAGCCTAATAAACGCTCTCGAATTTGGCTCGGTTCTTATTCCTCTCCCGTCGCCGCCGCCCGTGCCTACGACGCCGCCGTCTTCCACCTCCGTGGCCCCACCGCCCGCCTTAATTTTCCTGACTTTTTCACCACCGTTGACCGCTCCTTCCCTCTCTCCGCCGCTGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCATGTCGACGCCCTCGAGTCGTCTCTCCGACATCACTTCGTCAATTCCTCCGACCAAAGTCCCAACCCCACGAAGCTTCGTTCTTCTTCAAGTGGGTTTTCCGATCGGGTCGACTTGAATAAATTTCCTGACCCGGAAGACGCCGATGGCGACTGCGCTAGCACTCATTGGACAAGCTGA 465 54.84 MKEKNEERKLKQFKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDAAVFHLRGPTARLNFPDFFTTVDRSFPLSAAAVRKIAAEVGAHVDALESSLRHHFVNSSDQSPNPTKLRSSSSGFSDRVDLNKFPDPEDADGDCASTHWTS 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25514942 25515406 + ClCG02G012230.1 Cla02g01198 267324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01198 154 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Cla02g01198 154 Pfam AP2 domain 12 61 IPR001471 GO:0003700|GO:0006355
Cla02g01198 154 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Cla02g01198 154 PRINTS Ethylene responsive element binding protein signature 51 71 IPR001471 GO:0003700|GO:0006355
Cla02g01198 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 6 144 - -
Cla02g01198 154 Gene3D AP2/ERF domain 11 70 IPR036955 GO:0003700|GO:0006355
Cla02g01198 154 MobiDBLite consensus disorder prediction 108 154 - -
Cla02g01198 154 MobiDBLite consensus disorder prediction 108 131 - -
Cla02g01198 154 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
Cla02g01198 154 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Cla02g01198 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 6 144 - -
Cla02g01198 154 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01659 Cla02g01198 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01198 Cla-Chr2:25514942 Cla05g02061 Cla-Chr5:32319879 2.11E-55 dispersed
Cla01g01659 Cla-Chr1:31472560 Cla02g01198 Cla-Chr2:25514942 4.51E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60648 PF00847 AP2 2.90E-11 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01198 K09286 - csv:101209150 247.284