Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01199 ATGTGGGATCTCAATGATTCTCCCGATTATGGCGGAACTGATGAATTTGAGGTTCTTTCATCAATTGATGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCAAGCTCTTCGGTGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCTAGCGTCGGCGAGGATGAACCACTAGTCCATCGGAAAAACTTCTCGGTGACCCACCCGCTGGCGACCCGGCAGTTCTTCCCCTTGGAGGATTCCGACGTCGGGGCATCATCGGCCGCCGTCGGTGGTTCAGCTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCGATGGCGGTTCTGCAGCCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCCCGGAGTTCTCAATACCGCGGCGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGCAGCTGCTCGAGCCTACGACAGGGCGGCTATAAAGTTTCGAGGATCAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATTTGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAACCTCAAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCTGAGATCGAAGCTGCAAGGTATGTTTATGAGTCCTTTGTTGTGCTTGTTGATCTGTTTAGATTACCTGATTATGAACTTCAACTTGTAAGTGCTACTTGTTTTAGAGCTTATGATAAAGCTGCAATCAAATGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTGGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAGCCACACCCTTTCATTTGGGAATCATTGCCCAAATGTCACCCCAAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGAAGCTGTACGTTCCTTCAGACAGAGAAAATGCAGTTTCGTAGTGAAATGATAGTTCGATCTCCACCGTCCGTCGAAATGATGAAACATGGGCGCTTGGAGACACCCATGGAATTGCAGACTCTTCACAATTACTCTCCACAGATCAATCAATCAAACTCTCAAATTCAGTTGTTGAGCAGCAGCAATGAAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCAAAATTGGCTGCAGAAAAATAATGGATGCTTCTTACAGAGACCCTCTTGA 1548 46.25 MWDLNDSPDYGGTDEFEVLSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVHRKNFSVTHPLATRQFFPLEDSDVGASSAAVGGSATFPRARWVGVKFCQTEPVAAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGSEADINFSIEDYEEDLQQMGNLTKEEFVHVLRRQSTGYPRGTSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARYVYESFVVLVDLFRLPDYELQLVSATCFRAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVWEQNLDLRLGNSSSKSHTLSFGNHCPNVTPNIDLQITNESNPQESNIFENDNGGSCTFLQTEKMQFRSEMIVRSPPSVEMMKHGRLETPMELQTLHNYSPQINQSNSQIQLLSSSNEGGLGSDELSLCLSEGHQWQQSGGSQQFANAAASSGFPQLQISTSQNWLQKNNGCFLQRPS 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25549354 25553020 + ClCG02G012240.1 Cla02g01199 267325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01199 515 CDD AP2 233 322 IPR001471 GO:0003700|GO:0006355
Cla02g01199 515 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700|GO:0006355
Cla02g01199 515 Pfam AP2 domain 233 272 IPR001471 GO:0003700|GO:0006355
Cla02g01199 515 Pfam AP2 domain 142 190 IPR001471 GO:0003700|GO:0006355
Cla02g01199 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 301 493 - -
Cla02g01199 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 272 - -
Cla02g01199 515 SUPERFAMILY DNA-binding domain 233 285 IPR016177 GO:0003677
Cla02g01199 515 SMART rav1_2 234 326 IPR001471 GO:0003700|GO:0006355
Cla02g01199 515 SMART rav1_2 142 204 IPR001471 GO:0003700|GO:0006355
Cla02g01199 515 ProSiteProfiles AP2/ERF domain profile. 234 272 IPR001471 GO:0003700|GO:0006355
Cla02g01199 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 301 493 - -
Cla02g01199 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 272 - -
Cla02g01199 515 CDD AP2 142 197 IPR001471 GO:0003700|GO:0006355
Cla02g01199 515 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677
Cla02g01199 515 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700|GO:0006355
Cla02g01199 515 Gene3D AP2/ERF domain 233 321 IPR036955 GO:0003700|GO:0006355
Cla02g01199 515 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Cla02g01199 515 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01658 Cla02g01199 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01199 Cla-Chr2:25549354 Cla02g02027 Cla-Chr2:35285902 3.07E-90 dispersed
Cla01g01658 Cla-Chr1:31446250 Cla02g01199 Cla-Chr2:25549354 8.95E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60649 PF00847 AP2 3.50E-10 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01199 K09284 - csv:101208665 766.918