Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g01199 | ATGTGGGATCTCAATGATTCTCCCGATTATGGCGGAACTGATGAATTTGAGGTTCTTTCATCAATTGATGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCAAGCTCTTCGGTGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCTAGCGTCGGCGAGGATGAACCACTAGTCCATCGGAAAAACTTCTCGGTGACCCACCCGCTGGCGACCCGGCAGTTCTTCCCCTTGGAGGATTCCGACGTCGGGGCATCATCGGCCGCCGTCGGTGGTTCAGCTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCGATGGCGGTTCTGCAGCCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCCCGGAGTTCTCAATACCGCGGCGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGCAGCTGCTCGAGCCTACGACAGGGCGGCTATAAAGTTTCGAGGATCAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATTTGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAACCTCAAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCTGAGATCGAAGCTGCAAGGTATGTTTATGAGTCCTTTGTTGTGCTTGTTGATCTGTTTAGATTACCTGATTATGAACTTCAACTTGTAAGTGCTACTTGTTTTAGAGCTTATGATAAAGCTGCAATCAAATGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTGGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAGCCACACCCTTTCATTTGGGAATCATTGCCCAAATGTCACCCCAAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGAAGCTGTACGTTCCTTCAGACAGAGAAAATGCAGTTTCGTAGTGAAATGATAGTTCGATCTCCACCGTCCGTCGAAATGATGAAACATGGGCGCTTGGAGACACCCATGGAATTGCAGACTCTTCACAATTACTCTCCACAGATCAATCAATCAAACTCTCAAATTCAGTTGTTGAGCAGCAGCAATGAAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCAAAATTGGCTGCAGAAAAATAATGGATGCTTCTTACAGAGACCCTCTTGA | 1548 | 46.25 | MWDLNDSPDYGGTDEFEVLSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVHRKNFSVTHPLATRQFFPLEDSDVGASSAAVGGSATFPRARWVGVKFCQTEPVAAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGSEADINFSIEDYEEDLQQMGNLTKEEFVHVLRRQSTGYPRGTSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARYVYESFVVLVDLFRLPDYELQLVSATCFRAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVWEQNLDLRLGNSSSKSHTLSFGNHCPNVTPNIDLQITNESNPQESNIFENDNGGSCTFLQTEKMQFRSEMIVRSPPSVEMMKHGRLETPMELQTLHNYSPQINQSNSQIQLLSSSNEGGLGSDELSLCLSEGHQWQQSGGSQQFANAAASSGFPQLQISTSQNWLQKNNGCFLQRPS | 515 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 25549354 | 25553020 | + | ClCG02G012240.1 | Cla02g01199 | 267325 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g01199 | 515 | CDD | AP2 | 233 | 322 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01199 | 515 | ProSiteProfiles | AP2/ERF domain profile. | 142 | 198 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01199 | 515 | Pfam | AP2 domain | 233 | 272 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01199 | 515 | Pfam | AP2 domain | 142 | 190 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01199 | 515 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 | 301 | 493 | - | - | |
Cla02g01199 | 515 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 | 1 | 272 | - | - | |
Cla02g01199 | 515 | SUPERFAMILY | DNA-binding domain | 233 | 285 | IPR016177 | GO:0003677 | |
Cla02g01199 | 515 | SMART | rav1_2 | 234 | 326 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01199 | 515 | SMART | rav1_2 | 142 | 204 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01199 | 515 | ProSiteProfiles | AP2/ERF domain profile. | 234 | 272 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01199 | 515 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 301 | 493 | - | - | |
Cla02g01199 | 515 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 272 | - | - | |
Cla02g01199 | 515 | CDD | AP2 | 142 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01199 | 515 | SUPERFAMILY | DNA-binding domain | 141 | 199 | IPR016177 | GO:0003677 | |
Cla02g01199 | 515 | Gene3D | AP2/ERF domain | 141 | 200 | IPR036955 | GO:0003700|GO:0006355 | |
Cla02g01199 | 515 | Gene3D | AP2/ERF domain | 233 | 321 | IPR036955 | GO:0003700|GO:0006355 | |
Cla02g01199 | 515 | PRINTS | Ethylene responsive element binding protein signature | 235 | 246 | IPR001471 | GO:0003700|GO:0006355 | |
Cla02g01199 | 515 | PRINTS | Ethylene responsive element binding protein signature | 302 | 322 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g01658 | Cla02g01199 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01199 | Cla-Chr2:25549354 | Cla02g02027 | Cla-Chr2:35285902 | 3.07E-90 | dispersed | |
Cla01g01658 | Cla-Chr1:31446250 | Cla02g01199 | Cla-Chr2:25549354 | 8.95E-148 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60649 | PF00847 | AP2 | 3.50E-10 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g01199 | K09284 | - | csv:101208665 | 766.918 |