Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01213 ATGGAGTGGGTTCGAGGGGACCAACTCGGCCGTGGAAATTTTGCCAAAATCAATTTAGCAAAACCAACAAAGGGGTTTGATCAGTTCCCGCCATTAATGGCCGTCAAATCCTCTGTTTCTTCTCTATCCTCTGTTTCGCTCAAGAACGAGAAGCAAATTCTGGATCGAATTGGGATTTGCCCACAGATTGTTACTTGTTTTGGCGATGGAATCAGTGTTGAAAGTGATGGGGAGAAGTGTTATAATCTGTTCTTGGAGTATGCCAATGGCGGAAGTCTTGCGGATGTTGTGAGAATCCATGGCGGTGGGTTGCCGGAATTCGATGTTCGAAGGTACACGAAGGCGATTCTTTGGGGACTCCGGCATGTTCATGGCAATGGGTTTGTTCATTGCGATTTGAAGCTTTCGAATGTGTTGGTTTTTGGGAATGGCGATGTTAAGATCGCTGATTTTGGGCTTGCTAAAGCGGCTGGAAAAATTACGGCGGCGGAAACAGAGGAGCGATTTGAGTGGAGAGGAACTCCGATGTATATGTCGCCGGAGACTGTGAACGGTGGTGAGTATGAGCCGCCGTGTGATATTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGCTGGAAAGCCGGCGTGGAGGGTTGGGCCGGCAACGGATATATTTGGATTGATGATGAGGATTGGAGTCGGAGACGAAGTACCGGAGATGCCGGAGAATTTATCGGCGGAAGGGAAAGATTTTATCCGGCGGTGTTTGGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTTTGAACCACCCATTCGTAGCCGGTGCCGGTGATGCTGTTACATTGAAGGAAGCAGAAGTAGCGACGGAGTCGCCGACGGGTCCTTTCGACTTCCCGGAATTCGTTTGTTCCGAACAGGGTTCTGATGAGTGGAGTTTCTGCTCTTCTAATTCGTCGCCGGAGATTTTGAGTAGGGTCCGGCGGCTGGTGACGGGGAAGCCTTTGGACTGGTCTGTGATGGATAGTTGGGTGACAGTGAGGTGA 1035 50.82 MEWVRGDQLGRGNFAKINLAKPTKGFDQFPPLMAVKSSVSSLSSVSLKNEKQILDRIGICPQIVTCFGDGISVESDGEKCYNLFLEYANGGSLADVVRIHGGGLPEFDVRRYTKAILWGLRHVHGNGFVHCDLKLSNVLVFGNGDVKIADFGLAKAAGKITAAETEERFEWRGTPMYMSPETVNGGEYEPPCDIWALGCAVVEMVAGKPAWRVGPATDIFGLMMRIGVGDEVPEMPENLSAEGKDFIRRCLVKDPRKRWTAEMLLNHPFVAGAGDAVTLKEAEVATESPTGPFDFPEFVCSEQGSDEWSFCSSNSSPEILSRVRRLVTGKPLDWSVMDSWVTVR 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25782745 25783779 + ClCG02G012360.1 Cla02g01213 267339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01213 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 319 - -
Cla02g01213 344 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01213 344 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 319 - -
Cla02g01213 344 SMART serkin_6 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01213 344 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01213 344 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Cla02g01213 344 CDD STKc_MAPKKK 2 270 - -
Cla02g01213 344 Gene3D Transferase(Phosphotransferase) domain 1 2 293 - -
Cla02g01213 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Cla02g01213 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01652 Cla02g01213 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01213 Cla-Chr2:25782745 Cla09g00317 Cla-Chr9:3064267 2.58E-64 dispersed
Cla01g01652 Cla-Chr1:31386507 Cla02g01213 Cla-Chr2:25782745 7.59E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80346 PF00069 Pkinase 9.60E-51 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01213 - - csv:101214756 631.713