Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla02g01214 | ATGGCGGACGAACAGCCCTCAGCCTCCAATCGGCGGAGGAGCCGAGGATCTGAGGCAGCTGCCCGACTTACGGCTCTCGAACGTCTCAAAGCCATCCGCAGCGGTGGCCGTCGATCCGAAGCTGGTGGTTTCCAAGTGAAGTTAGAAAACCCTATCTACGATACGATTCCAGAGGATGAGTATGATGCTCTCGTCGCAAAGCGTCGCGAAGAGGCCCGAGGGTTTATTGTCGATGACGACGGTCTTGGATATGGAGACGAAGGTGAGGAAGAAGATTGGTCGAAAGCTGGGGTTTGTTCTTCCGATGAGTCTGATGGTGAGCTAGATAAACCTAAGAAGAGGAAAGTAGAGAAGAAAGAGGCGCAACCTAAAAAACCCTCTTCTTCTTCTCTTTCGGCGGCGGCAGCGATGATGGGGAAACAAAAGCTTTCTTCGATGTTTACTTCATCGATCTTCAGGAAAACGGCTAGAGACGATAAGGCTAAAGGATTGGCGTGTGATAGTATTGTGGATGATGTGATTGCGGAATTTGCGCCAGATGAGACTGATAGAGAGAGGCGTAGAAAGGGGCCAATTGGAGCTATACCGATTTCGAGGACTGTTGCGCCTGTTCCTGCTGTGAAGTCCGAGGGATTAACTGCTCAGAGTCTTAATTTGACTGGCGGGTCTGAATTGATTAAGGATAATGAAAATGGGAACTCTGGAATGACCAGGGTTGTTGCAGACAGTGATTTAGAGCCTGTGCGAGCTGGTGTAGAGGTCCAGGGAAATGGTGAGACTAAGGAATTCGATCCGAAGGAGGACTTGAATTCTCAAACCAACTTGGACTTGGTTGAGCAATCACCTAATTCTTCGATCAAGGAAGATGTAAATGGGGATAGCATGCCAATTATGGTTGAAACGAAGGCAGAACCGTTAGTGAAGAAGGAGCCGGTGAGTACTTTGAATGCTAAGATCAGCAATGAAAGAGACCCAGCTTTGAGTGCTACTGCGGGATGGCAAGCAGTGAGAAGTGAAGGGAGTGGAAGTGTTAATTCTGCAGCAGAAACTGCTGAAGAGAAATCCGATTTTGATGTTGACGCCGACGGCTCTCTCCCTTTCTATATCGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTATTTGGGAAGGTCAAAGCTGGGGATACGTTCCACAGTTGTTGTGTGGTGGTGAAAAATATGCAAAGATGCATATATGCCATTCCTAGTGCTTCTTTTCTCCATTCGGATGAGATGTTGGAGCTTCAGAAGGATGCTGAACAGTCTAAGCTTTCTCCTGCAGATCTGCGTGCCAAATTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATGGCTAAGCAGTTGTTAGATCTCAATGTTTCAACATTTAGCATGACACCGGTGAAGAGGAAGTATGCATTTGAGCGTCAAGACATACCTGCGGGGGAAAACTATGCTCTTAAGATTAATTACCCATTCAAGCACCCCCCACTTCCCGCTGATCTAAAAGGAGAATCTTTCTGTGCTCTTTTAGGAACACATCGCAGTGCCTTAGAGCTTCTCCTCATTAAAAGGAAAATTAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTCTCTTCCTGTCCTGCTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCCTCAAAAGATGTTCAAACTTCAACTTCATCAAGCAAAACTTTGGAGATTCCTTCTATGATTGTCACTGCAATACACATAAAGACCATCATTAATGAAAGACAGAATGTCAATGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAATCTGCAGATAGAAATTTGAAGGCTGGATCAAATGTTCTAATCTGCGAGGGCAATGAAAGGGCATTGTTAAATCGGTTAATGATTGAATTATTCAAATTGGATAGTGATGTGTTGGTTGGGCACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGCATGTGGTCCAAAATAGGTCGCCTTAAGAGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGGGCAAGTCCAGGACTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACGTATTTGTCTTCCCGTGACCTATTGAAGGAGATAAGTTATTCTTTGACAGAGCTGGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCCCTCCACATGAAATTCCAAAAATGTATCAAGCATCAGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTAATGTTTCATTTAAGCGTTCTTCCCCTTACTCGACAATTAACGAATATCAGTGGTAATCTCTGGGGAAGAAGCCTACAGGGTGCTAGGGCCCAAAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGACTTCATCTTATGTGAAGGAAAAAAAGATGGTAAAAAAGAGAACGAATCATAGTTCTGAGGAGAAAAATGTTGATGAATTTGATTTAGATGATGCAAACGTAGAAGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGGTCCTCCTATTCAGGTGGGCTAGTCTTGGAGCCAAAGCGAGGTTTATATGATAAGTATGTATTGCTCCTGGACTTCAACAGTCTGTACCCTTCAATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGTTCCTCTACTGCCATCTAGTAGAGTGACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCAACTGGTCTCAAGCTTCAGCAACTTGACATTCAACAGCAGGCCCTAAAGCTCACTGCCAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTCAAGAATAATCTGAACCTAGAGGTAATTTATGGCGATACGGATTCAATAATGATTCATAGTGGACTGGATGATATTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTTAACAAAAAATACAAGTGCTTAGAAATTGATCTAGACGGTTTGTATAAGAGAATGTTGCTTCTCAAGAAAAAGAAATATGCTGCTATAAAGTTGCAGTTTAAGGACGGAATGCCATATGAGGTTATTGAGCGAAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAATCAAATATTGTCTGGAGGGTCATGCGAGGATGTCATTGAATCAATACATGACTCTCTTATGAAGATACAAGAGGATATGAGAAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAGCCACCTGAAGCTTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCTCAAAGGTTAAAACAAATGGGCTATTCTACTGGCTGTTCTGTTGGTGATACGATCCCATATATTATTTGCTGTGAGCAGGGGTCTACTTCTAGTGGTTCTACAAGCATTGCTCAACGGGCTAGACATCCTGATGAATTGAAAAAAGAGGATGGAAAATGGATGATTGACATCGAATACTACCTTTCACAGCAGATTCACCCTGTGGTCTCTCGTCTATGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGACTGTTTGGGGCTTGATTCATCAAAGTTCCAGATCAGATCAAGTGAAGTTTCCCGAAGCGATGTCTCCACTTCCCTCCTGTGTTCTGTAAATGATGAAGAAAGGTATCAGGGATGCATACCACTGACATTAACTTGCCCCAGCTGTTCTGGTACTTTTACGTGTCCTGCTATCTTTAGTTCTGTATACAAATCTACAGATGGAAAGCAAGAAAAGTCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGAATTGTCCAAAATGTCCTGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGCAAAAAGGCAAGCAGATAGGTTCATTTCAATGTATTATAATGGCTTAATGATGTGTGATGATGAAACCTGCAACTATTCCACACGTGCCGTCAATCTTCGAGTTATGGGCGACTCTGAGAAAGGAACCATCTGCCCGAACTATCCCCACTGCAATGGGCATCTAGTAAGAAAGTACACAGAAGCCGATTTGTACAAGCAGCTTTCGTATTTCAGCCACATTTTGGATACCGAACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTGACTTTAGAGAAAGAAATGGCGAAAATTCGGCCAATAGTCAAGTTAGCTGCATCGACAATTCAAAGCATTCGGGATCGCAGTGCATATGGTTGGATGCAGTTGCAAAATTTTGTGGTAACATTTTGA | 4647 | 43.19 | MADEQPSASNRRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCSSDESDGELDKPKKRKVEKKEAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKTARDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGPIGAIPISRTVAPVPAVKSEGLTAQSLNLTGGSELIKDNENGNSGMTRVVADSDLEPVRAGVEVQGNGETKEFDPKEDLNSQTNLDLVEQSPNSSIKEDVNGDSMPIMVETKAEPLVKKEPVSTLNAKISNERDPALSATAGWQAVRSEGSGSVNSAAETAEEKSDFDVDADGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDTFHSCCVVVKNMQRCIYAIPSASFLHSDEMLELQKDAEQSKLSPADLRAKLQEVTAGLKNEMAKQLLDLNVSTFSMTPVKRKYAFERQDIPAGENYALKINYPFKHPPLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPASQRVSWCKFEVIVDSSKDVQTSTSSSKTLEIPSMIVTAIHIKTIINERQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESADRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGSIFGSGASPGLMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVPPHEIPKMYQASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKTSSYVKEKKMVKKRTNHSSEEKNVDEFDLDDANVEAPNTESGKGKKGSSYSGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVVPLLPSSRVTGVLPELLKNLVQRRRMVKSWMKNATGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNLNLEVIYGDTDSIMIHSGLDDIGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAIKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVIESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQGSTSSGSTSIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIRSSEVSRSDVSTSLLCSVNDEERYQGCIPLTLTCPSCSGTFTCPAIFSSVYKSTDGKQEKSVDEPTSKFWNNLNCPKCPDEANAGRMTPGMIANQAKRQADRFISMYYNGLMMCDDETCNYSTRAVNLRVMGDSEKGTICPNYPHCNGHLVRKYTEADLYKQLSYFSHILDTERCMEKLEVHARVTLEKEMAKIRPIVKLAASTIQSIRDRSAYGWMQLQNFVVTF | 1548 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 25786936 | 25798719 | + | ClCG02G012370.2 | Cla02g01214 | 267340 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla02g01214 | 1548 | MobiDBLite | consensus disorder prediction | 223 | 238 | - | - | |
| Cla02g01214 | 1548 | Pfam | DNA polymerase alpha subunit p180 N terminal | 26 | 93 | IPR024647 | - | |
| Cla02g01214 | 1548 | ProSitePatterns | DNA polymerase family B signature. | 1068 | 1076 | IPR017964 | GO:0000166|GO:0003676 | |
| Cla02g01214 | 1548 | MobiDBLite | consensus disorder prediction | 76 | 137 | - | - | |
| Cla02g01214 | 1548 | Gene3D | - | 1144 | 1330 | IPR042087 | - | |
| Cla02g01214 | 1548 | TIGRFAM | pol2: DNA polymerase (pol2) | 51 | 1298 | - | - | |
| Cla02g01214 | 1548 | Coils | Coil | 1094 | 1114 | - | - | |
| Cla02g01214 | 1548 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Cla02g01214 | 1548 | Pfam | DNA polymerase family B, exonuclease domain | 395 | 774 | IPR006133 | - | |
| Cla02g01214 | 1548 | Gene3D | - | 407 | 533 | - | - | |
| Cla02g01214 | 1548 | Gene3D | - | 580 | 896 | IPR036397 | GO:0003676 | |
| Cla02g01214 | 1548 | Gene3D | Palm domain of DNA polymerase | 919 | 1124 | IPR023211 | - | |
| Cla02g01214 | 1548 | Gene3D | Helix hairpin bin | 978 | 1029 | - | - | |
| Cla02g01214 | 1548 | MobiDBLite | consensus disorder prediction | 223 | 268 | - | - | |
| Cla02g01214 | 1548 | SUPERFAMILY | Ribonuclease H-like | 362 | 868 | IPR012337 | - | |
| Cla02g01214 | 1548 | MobiDBLite | consensus disorder prediction | 880 | 920 | - | - | |
| Cla02g01214 | 1548 | Gene3D | DNA Polymerase alpha, zinc finger | 1339 | 1533 | IPR038256 | - | |
| Cla02g01214 | 1548 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cla02g01214 | 1548 | Gene3D | - | 367 | 566 | - | - | |
| Cla02g01214 | 1548 | PRINTS | DNA-directed DNA-polymerase family B signature | 937 | 950 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
| Cla02g01214 | 1548 | PRINTS | DNA-directed DNA-polymerase family B signature | 1013 | 1025 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
| Cla02g01214 | 1548 | PRINTS | DNA-directed DNA-polymerase family B signature | 1066 | 1074 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
| Cla02g01214 | 1548 | MobiDBLite | consensus disorder prediction | 880 | 894 | - | - | |
| Cla02g01214 | 1548 | Pfam | DNA Polymerase alpha zinc finger | 1340 | 1544 | IPR015088 | GO:0003887|GO:0006260 | |
| Cla02g01214 | 1548 | MobiDBLite | consensus disorder prediction | 88 | 124 | - | - | |
| Cla02g01214 | 1548 | CDD | DNA_polB_alpha_exo | 580 | 831 | - | - | |
| Cla02g01214 | 1548 | SMART | polmehr3 | 580 | 1080 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
| Cla02g01214 | 1548 | SUPERFAMILY | DNA/RNA polymerases | 864 | 1316 | IPR043502 | - | |
| Cla02g01214 | 1548 | CDD | POLBc_alpha | 913 | 1316 | IPR045846 | GO:0003887|GO:1902975 | |
| Cla02g01214 | 1548 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 13 | 1547 | - | - | |
| Cla02g01214 | 1548 | Pfam | DNA polymerase family B | 840 | 1300 | IPR006134 | GO:0000166|GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01214 | Cla-Chr2:25786936 | Cla02g01535 | Cla-Chr2:29898306 | 1.56E-31 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla02g01214 | K02320 | - | csv:101211201 | 2801.54 |