Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01224 ATGCATTCCTTCTCTTTCATCTTGATTGAGTATGATATTGACGCAGGTGCAATGGGGGTATCATTACTTAAAGTGCTTCTTCGACATATATCATCATTTCTTCAACTTTCATCTTCTGACTACATTAATTTACAACCAACTCTGAAGTACTACCATAAAATAGAAGGGGTCTTGAAACTATTGAGACCAATTCTGGATGCCGTTGTCGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTGAAGATCTTGATCATTCAGTGGATGAACTAAGGGTGCTGTTTGAAAATCGGCAACCGCTATCGAGTAAAGTATACTTTGTATTGCAAACTGAAGCATTGATATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGTGTCCAAAAAATTAAGCATATTGGAAAGGAAGAAATATCTTTCGTTATTAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGAGATCCTAATTGAGGCTGTGGCGCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCTGAGGACATTGATCAAATGATTTCTCTTGTAACCCGAATGCATGAACGACTTATTATGATAAAGCAATCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTATTTATTAAAAATTGGATTGATCAGGGACTGAATGTTTGCCCGAAGACTAGACAGACATTGGTTCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCAAAGTCAGTGAACTTAAACCAGCTTTCCCCCCTTCTGGTTGGGAGCTTTGAGTCTGATACCCCTCGAGAACCCCGTTTTCCTCATTCCCCTGGCTACCAACCGATGTCTCCTCAGACAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCACTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAACGAGGGATTGATATTAGTAGACTGTTGCTTTCAAGTTCAGAAGATCAAACGGCCAAATTGGAAGAAAATGGTTGTGATTCGGTTGCTAAACCATCTACGTCACCATCTGGAACCAATGTTCTAAATACCAGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGACTTCATCTACCTCTAGTGCAGTCTCAAATGCTAATCACTCTCGAGGAACTTCAGGGGAAACCAATGAAGCTACACATTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGACTACCAACCACAGAGAACCAGAGCGAGAGCATCCACCGAGACTAGCGGACCCAAGATCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGTTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCACTTGACACTTTAAGAGGTGCCACAGCTGAATTGCGGTTGCTGGCTAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCGATTGAATATTTGGTTGATTTGCTCCTCTCTGCTGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAGTGCCATAGCTCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCGAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCCGGAGCAATAGGGCCCCTGGTTGAATTATTAGGCAATGGAACCCCAAGGGGAAAGAAGGATGCAGCTACAGCTCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACTATTCCCGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATCCCTGTTCTGGTTGAGGTCGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTCTGCACTACAAGCAATAGGCATTGCAGTATGGTGCTTCAAGAAGGAGCCGTGCCACCATTGGTGGCATTGTCTCAATCTGGCACCGCTAGAGCCAAAGAAAAGGTACATCAAATCTGTTCTTAA 2535 43.47 MHSFSFILIEYDIDAGAMGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGVLKLLRPILDAVVDSDIASDEELTQAFEDLDHSVDELRVLFENRQPLSSKVYFVLQTEALISKIGKFSLDIFQLLQSSNENLPEELSSTSLEHCVQKIKHIGKEEISFVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMISLVTRMHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQLSPLLVGSFESDTPREPRFPHSPGYQPMSPQTTRSAGSGKNLNSLGGTHRDGSSSLLSHSLSEDSLSNDAGDERGIDISRLLLSSSEDQTAKLEENGCDSVAKPSTSPSGTNVLNTSGEDEPSHSHNRTSSTSSAVSNANHSRGTSGETNEATHLSTNLTGYGSDAAGESKSEPLAAATSTTNHREPEREHPPRLADPRSRGNTMWLRPSERFASRIITSSVNETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVDLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKVHQICS 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25911001 25915829 - ClCG02G012465.1 Cla02g01224 267350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01224 844 MobiDBLite consensus disorder prediction 345 410 - -
Cla02g01224 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 696 738 IPR000225 GO:0005515
Cla02g01224 844 SMART arm_5 603 643 IPR000225 GO:0005515
Cla02g01224 844 SMART arm_5 808 844 IPR000225 GO:0005515
Cla02g01224 844 SMART arm_5 644 684 IPR000225 GO:0005515
Cla02g01224 844 SMART arm_5 766 806 IPR000225 GO:0005515
Cla02g01224 844 SMART arm_5 685 725 IPR000225 GO:0005515
Cla02g01224 844 SMART arm_5 726 765 IPR000225 GO:0005515
Cla02g01224 844 SMART Ubox_2 256 319 IPR003613 GO:0004842|GO:0016567
Cla02g01224 844 MobiDBLite consensus disorder prediction 465 503 - -
Cla02g01224 844 MobiDBLite consensus disorder prediction 431 542 - -
Cla02g01224 844 PANTHER U BOX DOMAIN-CONTAINING 25 841 - -
Cla02g01224 844 SUPERFAMILY ARM repeat 573 838 IPR016024 -
Cla02g01224 844 Pfam U-box domain 253 323 IPR003613 GO:0004842|GO:0016567
Cla02g01224 844 Coils Coil 196 226 - -
Cla02g01224 844 Pfam Armadillo/beta-catenin-like repeat 687 724 IPR000225 GO:0005515
Cla02g01224 844 Pfam Armadillo/beta-catenin-like repeat 644 683 IPR000225 GO:0005515
Cla02g01224 844 Pfam Armadillo/beta-catenin-like repeat 605 642 IPR000225 GO:0005515
Cla02g01224 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 614 656 IPR000225 GO:0005515
Cla02g01224 844 MobiDBLite consensus disorder prediction 521 535 - -
Cla02g01224 844 ProSiteProfiles U-box domain profile. 252 326 IPR003613 GO:0004842|GO:0016567
Cla02g01224 844 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 737 778 IPR000225 GO:0005515
Cla02g01224 844 Gene3D - 556 844 IPR011989 -
Cla02g01224 844 SUPERFAMILY RING/U-box 241 329 - -
Cla02g01224 844 MobiDBLite consensus disorder prediction 438 458 - -
Cla02g01224 844 MobiDBLite consensus disorder prediction 363 403 - -
Cla02g01224 844 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 25 841 - -
Cla02g01224 844 CDD RING-Ubox_PUB 257 299 IPR045210 -
Cla02g01224 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 327 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01224 Cla-Chr2:25911001 Cla03g00152 Cla-Chr3:1576062 4.35E-11 dispersed
Cla09g01047 Cla-Chr9:11123517 Cla02g01224 Cla-Chr2:25911001 1.35E-08 dispersed
Cla01g02091 Cla-Chr1:35240987 Cla02g01224 Cla-Chr2:25911001 1.44E-77 transposed
Cla03g00823 Cla-Chr3:10524609 Cla02g01224 Cla-Chr2:25911001 7.51E-31 transposed
Cla05g00046 Cla-Chr5:555287 Cla02g01224 Cla-Chr2:25911001 1.11E-11 transposed
Cla05g01752 Cla-Chr5:29363500 Cla02g01224 Cla-Chr2:25911001 1.24E-15 transposed
Cla05g02119 Cla-Chr5:32786870 Cla02g01224 Cla-Chr2:25911001 1.44E-08 transposed
Cla07g00205 Cla-Chr7:2215063 Cla02g01224 Cla-Chr2:25911001 7.89E-11 transposed
Cla08g01619 Cla-Chr8:28807783 Cla02g01224 Cla-Chr2:25911001 1.04E-81 transposed
Cla09g00729 Cla-Chr9:7190638 Cla02g01224 Cla-Chr2:25911001 1.95E-63 transposed
Cla01g01681 Cla-Chr1:31773639 Cla02g01224 Cla-Chr2:25911001 3.21E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01224 - - csv:101212423 1457.2