Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01240 ATGTATCATGATGAGAGAGAATTCAAATTTAGTATATATATATTAGTGGTTTTTGGTAGTGAAATTTCATTCATGGATACCTTGTTCAGGTCGGTCAATGATCTTGAATCCTCTAATCAACATTCTTACAACAATTCTAGCAGCAGCTCAAAGAATTGTAGTGATCAAAATCATTATTACCATCTTCAAAAGCCACAATCTGAAGAATGCTTCAACAATTTGTTCATGGAGGAAGAAGACCATTTCTCTGCATCCTCTTCTTTAGATCATAATCATCACCACCAACTCCCACAGTTTCAATGTTCTACCACCGGGACTAGTACTACATCCACCGGTACTACAGCTCCAAGGGATGAGTGGTTCTCTTCCTTCACCCAAGAGTTGAACTTTGAATTCTCTGATGATTGGGCATCCACGATACTCCTCCAAACAGCCATCGCCATTGTCGACAACAACACCAGTCGAATCCAACAACTCATGTGGATGTTGAATGAGCTCGGTTCTCCATATGGGGACATTGATCAAAAGCTAGCATTCTACTTCCTTCAAGGCATGTTTAGTCGCGTCACCGACTCCGGTGCCAAGTGGTACGGGACGTTGGTAGCGGCGTCGGAGAAACGGTCGTGTTTCGAGTCGATGAGAAGAATGGTGCTGAAGTTTGAGGAGGTGAGTCCATGGATGACATTTGGTCATGTTGCTTCAAATGGTTGGATTATGGAAGCTTTACAAGGTGAAAAGAAGTTGCATATAATTGATATGGCCGGAAACTCCTCATTTTGCACTCAATGGCCCACTTTCATTGAAGCTCTCGCAACACAATCGGACCAGACTCCGCACCTTACCCTCACATTGTTGGTTGCAGCCAAATCCGACGGAACCATACGAGCCCATAAGAAATTGGTGAAAGAAATAAGTAGAAGACTAGAGAAATTTGCAAGGCTTATGGGAGTTTCCTTCAAATTCAAACCCATTTTCCACTACGGCGACGTTTCACAGTTTGATTTTACACACTTAGGCATCAAACACGACGAGGCCCTCGCCGTCAACTGTGCCGGCGCCTTGCGCTCCGTCGCCCCCCTCCACAACCGCCGCGATTTTCTCATATCCCTGTTCCGATCTTTGCGTCCCAGGATTATCACCGTCGTAGAGGAGGAGGCCGATCTCGATCCCCACAGCGGCGTTGACTTTGTCAAACACATTCAGGAGTGTTTACGCTGGTTTAGGCTTTACTTTGATTCGTTGGACGGAAGTTTCCCGACCGCCACCGACGAGCAGTTCATGCTTGAACGCGCTGCCGGACGCGCCGTCGTGGATTTGCTTGCACGCGTGCCGGCGGAGTCGGTGGAGAGGCGCGAGACCGCCGCGCGTTGGGCGCGTCGTTTGTATGACGGTGGCTTTAAACCGGTGTCGTTTAGCGAGGATGTAAATGACGATGTACGCGCGCTAGTGAGGAGGTACAAGGATGGGTGGACGATGACGGACGGGGATGGCTCCGGTGCCGGAATATTTTTGGCTTGGAAGGGGCAGCCGGTTGTTTGGGCCTCCGCGTGGGCTCCAGTAGAGCTAGACGGAGAGAAGACACATGTGTGA 1590 48.68 MYHDEREFKFSIYILVVFGSEISFMDTLFRSVNDLESSNQHSYNNSSSSSKNCSDQNHYYHLQKPQSEECFNNLFMEEEDHFSASSSLDHNHHHQLPQFQCSTTGTSTTSTGTTAPRDEWFSSFTQELNFEFSDDWASTILLQTAIAIVDNNTSRIQQLMWMLNELGSPYGDIDQKLAFYFLQGMFSRVTDSGAKWYGTLVAASEKRSCFESMRRMVLKFEEVSPWMTFGHVASNGWIMEALQGEKKLHIIDMAGNSSFCTQWPTFIEALATQSDQTPHLTLTLLVAAKSDGTIRAHKKLVKEISRRLEKFARLMGVSFKFKPIFHYGDVSQFDFTHLGIKHDEALAVNCAGALRSVAPLHNRRDFLISLFRSLRPRIITVVEEEADLDPHSGVDFVKHIQECLRWFRLYFDSLDGSFPTATDEQFMLERAAGRAVVDLLARVPAESVERRETAARWARRLYDGGFKPVSFSEDVNDDVRALVRRYKDGWTMTDGDGSGAGIFLAWKGQPVVWASAWAPVELDGEKTHV 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26172055 26175961 - ClCG02G012640.2 Cla02g01240 267366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01240 529 ProSiteProfiles GRAS family profile. 128 518 IPR005202 -
Cla02g01240 529 Pfam GRAS domain family 139 517 IPR005202 -
Cla02g01240 529 PANTHER PROTEIN SHORT-ROOT 25 518 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cla02g01240 529 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 518 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01715 Cla-Chr1:32078527 Cla02g01240 Cla-Chr2:26172055 0 dispersed
Cla02g01240 Cla-Chr2:26172055 Cla06g00092 Cla-Chr6:956563 2.51E-125 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60652 PF03514 GRAS 1.50E-87 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01240 - - csv:101210294 811.986