Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla02g01248 | ATGGACGACATCGACATTCTGAAATCGACACTCTCCCCATCCGACATGTCGTCGGCCACAATGTTCATGAACAATAACACGGCCAATTGCCCTCAACTCCCAGTCGTCCCACCGCCGTATTTCTCCGATTTCTCCCCGCCGGGCAGCTCCTTATTCCAAAGCCCAACAATAATCCCGGAGGCTCCGGCACGGCGGGGGCGGAGCGGGAGCGGCGGAGGAATGGCGGCGATGAGAGAGATGATATTCAGAATAGCGGCGATGCAGCCAATAGAAATAGACCCGGAGGCAATAAAGGCGCCGAAGCGGCGGAACGTGAGAATCTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACCGGCGGGAGAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGTTGGTGCCCGGCGGGACGAAGATGGACACGGCGTCGATGCTTGATGAGGCGGTGCATTATGTGAAGTTCTTGAAGAGGCAAGTCCAGACGTTGGAGCAGGCTGGATTTCATAATAATAATTTTAATTTCGTGAATTCTGCCAATTTAAATTACTCTTCTGCCCTTTTCAAGGCTTGCCAAATAATGCCTGCTTCCTTGCAAATGCATTCATGA | 609 | 53.2 | MDDIDILKSTLSPSDMSSATMFMNNNTANCPQLPVVPPPYFSDFSPPGSSLFQSPTIIPEAPARRGRSGSGGGMAAMREMIFRIAAMQPIEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNFNFVNSANLNYSSALFKACQIMPASLQMHS | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 26377103 | 26377711 | - | ClCG02G012720.1 | Cla02g01248 | 267374 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla02g01248 | 202 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 107 | 156 | IPR011598 | GO:0046983 | |
| Cla02g01248 | 202 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 111 | 166 | IPR036638 | GO:0046983 | |
| Cla02g01248 | 202 | Gene3D | - | 106 | 173 | IPR036638 | GO:0046983 | |
| Cla02g01248 | 202 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 67 | 198 | IPR045843 | GO:0003700|GO:0006355 | |
| Cla02g01248 | 202 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 67 | 198 | - | - | |
| Cla02g01248 | 202 | Coils | Coil | 146 | 166 | - | - | |
| Cla02g01248 | 202 | CDD | bHLH_AtIND_like | 108 | 164 | - | - | |
| Cla02g01248 | 202 | SMART | finulus | 113 | 162 | IPR011598 | GO:0046983 | |
| Cla02g01248 | 202 | Pfam | Helix-loop-helix DNA-binding domain | 116 | 156 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01522 | Cla-Chr1:29721734 | Cla02g01248 | Cla-Chr2:26377103 | 6.70E-46 | dispersed | |
| Cla02g01248 | Cla-Chr2:26377103 | Cla08g01577 | Cla-Chr8:28452061 | 2.20E-44 | dispersed | |
| Cla02g01248 | Cla-Chr2:26377103 | Cla05g02049 | Cla-Chr5:32207526 | 2.17E-44 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60653 | PF00010 | HLH | 7.00E-07 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla02g01248 | - | - | cmo:103497414 | 266.929 |