Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01273 ATGTCACAACAAGACTACCAACAAGCGGCGGCGGCAGCCGCGGCGGCAGGTTTCTTCACGCCTTTCTGCAATGGCTATGATAGATCCTCCACAGCCCACCAAGACTCTCAACAACACTACCAACACATAGCCCACCAGATCCGTAAGGAGAAGCTCCGCCTCCAAGGCTTCGACCCACAGCCACATCCACCGTCGTTAGTCGGAATTGACGATGACAACGACGACCAATCCGCTGTCCACCATGTCTACGACTCCACCGGAATTTTATCCGAAATGTTCAATTTCCCTCCGCCTCCACCACCACAGCCACCGCAAACCGACTGGTACGGTAACCGGCAAACAATCAACGCGGCCGACTCGGCTGTCGCCATGCAGCTTTTTCTAATGAACCCGAATCCCCGGTCGCCGTCTCCGCCACCGCCACCACCTTCCTCAACACTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGTTCCAGAGCAAGAAACAGGTGACCATTCTTCATCAAACCCTAACGAAGGCCGTCTTTCGTTGTCATTGTCATCGTCTTTGGAAGCTGCAAAAGCCGAGGAATTGAGAATGGGTGACAGCACCAACGGGTTACTTTATCATCACCACCATCAGCCTCAACATGTACATGTCGGATCAATTGGGTCCTCCAATCCACTGGGAGTCGTCAACTTATTGAGAAACTCAAAATATGTCAAAGCTGCACAAGAATTATTAGAGGAATTTTGTAGCGTGGGAAGAGACTACCAACAAGCGGCGGCGGCAGCCGCGGCGGCAGGTTTCTTCACGCCTTTCTGCAATGGCTATGATAGATCCTCCACAGCCCACCAAGACTCTCAACAACACTACCAACACATAGCCCACCAGATCCGTAAGGAGAAGCTCCGCCTCCAAGGCTTCGACCCACAGCCACATCCACCGTCGTTAGTCGGAATTGACGATGACAACGACGACCAATCCGCTGTCCACCATGTCTACGACTCCACCGGAATTTTATCCGAAATGTTCAATTTCCCTCCGCCTCCACCACCACAGCCACCGCAAACCGACTGGTACGGTAACCGGCAAACAATCAACGCGGCCGACTCGGCTGTCGCCATGCAGCTTTTTCTAATGAACCCGAATCCCCGGTCGCCGTCTCCGCCACCGCCACCACCTTCCTCAACACTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGTTCCAGAGCAAGAAACAGGTGACCATTCTTCATCAAACCCTAACGAAGGCCGTCTTTCGTTGTCATTGTCATCGTCTTTGGAAGCTGCAAAAGCCGAGGAATTGAGAATGGGTGACAGCACCAACGGGTTACTTTATCATCACCACCATCAGCCTCAACATGTACATGTCGGATCAATTGGGTCCTCCAATCCACTGGGAGTCGTCAACTTATTGAGAAACTCAAAATATGTCAAAGCTGCACAAGAATTATTAGAGGAATTTTGTAGCGTGGGAAGAGGTCAGTTTAAGAAAAATAATAATCATGATAACAAATTTAATAATAAATCAAATTTGCCCTCCAACTCCAATTCCCACGGCGGTGGCGGCGACGGTACCGGTGTTTCTTCCTCTTCGACAAAGGATCATCAGCCAGCTTTGTCAGCAGCTGATAGGATTGACCATCAAAGAAGGAAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTAGTAAATTCATTCGACGAGGTGATGGGGTTTGGAGCGGCGGTGCCATACACATCGTTGGCGCAAAAGGCGATGTCGAGACATTTCAGGTGTCTAAAGGACGTTATATCAGCGCAGTTGAAGCATAGTTGCGAGATGTTGGGAGAGAAAGATGGAGGAGTAAGTGGAAGGGCCTCAGGAATAACAAAGGGTGAGACTCCAAGGCTAAAGCTCTTGGAGCAAAGCCTTAGGCAGCAACGAGCTTTCCACCAAATGGGCATTATGGAACAAGAAGCTTGGCGTCCCCAACGCGGTTTACCCGAACGCTCTGTCAACATCTTACGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTACCCTAGCGATGCTGATAAACATTTGTTGGCTAGGCAGACTGGTTTGTCAAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAACAAGATGATGATGATGATGATAATAATACGGATGAAGACACACAAACCAACTCTCAACAAATTACCACTAATAATAATCCTCTTTCACAAACTCCAACGCCGCCTACTTCCTCCGCCGCACCACCACCCCCCTCCTCCTCCGCCGCGTCTCCACCCAAAATACCCGATCACCCTTCACCCTTCTCCGCCGCCGCTACCCACTGCTTTCCGGCTACCCATTATGACTCAGACCTCCACGACACGTGTCGTCGCCTCACCGTTCTCCCTGCACCTGATCTTCAATTCGGGACCACAACCTCTTCTGCCACGTCTGACATCCCCGGCCCCACCACCCTCATAAGGTTCGGGACCACCGCCGGTGACGTGTCGCTCACACTAGGTTTACGCCATGCCGGAAATATCCCCGATAAAACCTCTTCTTTCTCCCTCAGATCCGAGTTTGGAGGCTGTTAG 2712 50.92 MSQQDYQQAAAAAAAAGFFTPFCNGYDRSSTAHQDSQQHYQHIAHQIRKEKLRLQGFDPQPHPPSLVGIDDDNDDQSAVHHVYDSTGILSEMFNFPPPPPPQPPQTDWYGNRQTINAADSAVAMQLFLMNPNPRSPSPPPPPPSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSTNGLLYHHHHQPQHVHVGSIGSSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRDYQQAAAAAAAAGFFTPFCNGYDRSSTAHQDSQQHYQHIAHQIRKEKLRLQGFDPQPHPPSLVGIDDDNDDQSAVHHVYDSTGILSEMFNFPPPPPPQPPQTDWYGNRQTINAADSAVAMQLFLMNPNPRSPSPPPPPPSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSTNGLLYHHHHQPQHVHVGSIGSSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKKNNNHDNKFNNKSNLPSNSNSHGGGGDGTGVSSSSTKDHQPALSAADRIDHQRRKVDRRYNHYCEQMQMVVNSFDEVMGFGAAVPYTSLAQKAMSRHFRCLKDVISAQLKHSCEMLGEKDGGVSGRASGITKGETPRLKLLEQSLRQQRAFHQMGIMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKQDDDDDDNNTDEDTQTNSQQITTNNNPLSQTPTPPTSSAAPPPPSSSAASPPKIPDHPSPFSAAATHCFPATHYDSDLHDTCRRLTVLPAPDLQFGTTTSSATSDIPGPTTLIRFGTTAGDVSLTLGLRHAGNIPDKTSSFSLRSEFGGC 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26728274 26735113 - ClCG02G012970.1 Cla02g01273 267399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01273 903 MobiDBLite consensus disorder prediction 56 77 - -
Cla02g01273 903 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 328 890 - -
Cla02g01273 903 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 308 - -
Cla02g01273 903 Gene3D - 685 747 - -
Cla02g01273 903 MobiDBLite consensus disorder prediction 750 814 - -
Cla02g01273 903 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 328 890 - -
Cla02g01273 903 MobiDBLite consensus disorder prediction 132 148 - -
Cla02g01273 903 MobiDBLite consensus disorder prediction 129 153 - -
Cla02g01273 903 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 68 308 - -
Cla02g01273 903 MobiDBLite consensus disorder prediction 766 786 - -
Cla02g01273 903 MobiDBLite consensus disorder prediction 528 561 - -
Cla02g01273 903 MobiDBLite consensus disorder prediction 787 811 - -
Cla02g01273 903 SMART prehox3 489 627 IPR006563 -
Cla02g01273 903 MobiDBLite consensus disorder prediction 388 404 - -
Cla02g01273 903 MobiDBLite consensus disorder prediction 385 409 - -
Cla02g01273 903 Pfam Associated with HOX 239 302 IPR006563 -
Cla02g01273 903 Pfam Associated with HOX 495 626 IPR006563 -
Cla02g01273 903 ProSiteProfiles 'Homeobox' domain profile. 679 742 IPR001356 GO:0003677
Cla02g01273 903 MobiDBLite consensus disorder prediction 751 765 - -
Cla02g01273 903 Pfam Homeobox KN domain 699 738 IPR008422 GO:0003677|GO:0006355
Cla02g01273 903 CDD homeodomain 682 743 IPR001356 GO:0003677
Cla02g01273 903 SUPERFAMILY Homeodomain-like 684 749 IPR009057 -
Cla02g01273 903 MobiDBLite consensus disorder prediction 519 572 - -
Cla02g01273 903 SMART HOX_1 682 746 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01273 Cla-Chr2:26728274 Cla10g01741 Cla-Chr10:33296516 5.86E-79 dispersed
Cla01g00239 Cla-Chr1:2404412 Cla02g01273 Cla-Chr2:26728274 2.21E-83 transposed
Cla01g01594 Cla-Chr1:30651707 Cla02g01273 Cla-Chr2:26728274 6.36E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60656 PF07526 POX 2.70E-40 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01273 - - csv:101212977 904.82