Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g01273 | ATGTCACAACAAGACTACCAACAAGCGGCGGCGGCAGCCGCGGCGGCAGGTTTCTTCACGCCTTTCTGCAATGGCTATGATAGATCCTCCACAGCCCACCAAGACTCTCAACAACACTACCAACACATAGCCCACCAGATCCGTAAGGAGAAGCTCCGCCTCCAAGGCTTCGACCCACAGCCACATCCACCGTCGTTAGTCGGAATTGACGATGACAACGACGACCAATCCGCTGTCCACCATGTCTACGACTCCACCGGAATTTTATCCGAAATGTTCAATTTCCCTCCGCCTCCACCACCACAGCCACCGCAAACCGACTGGTACGGTAACCGGCAAACAATCAACGCGGCCGACTCGGCTGTCGCCATGCAGCTTTTTCTAATGAACCCGAATCCCCGGTCGCCGTCTCCGCCACCGCCACCACCTTCCTCAACACTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGTTCCAGAGCAAGAAACAGGTGACCATTCTTCATCAAACCCTAACGAAGGCCGTCTTTCGTTGTCATTGTCATCGTCTTTGGAAGCTGCAAAAGCCGAGGAATTGAGAATGGGTGACAGCACCAACGGGTTACTTTATCATCACCACCATCAGCCTCAACATGTACATGTCGGATCAATTGGGTCCTCCAATCCACTGGGAGTCGTCAACTTATTGAGAAACTCAAAATATGTCAAAGCTGCACAAGAATTATTAGAGGAATTTTGTAGCGTGGGAAGAGACTACCAACAAGCGGCGGCGGCAGCCGCGGCGGCAGGTTTCTTCACGCCTTTCTGCAATGGCTATGATAGATCCTCCACAGCCCACCAAGACTCTCAACAACACTACCAACACATAGCCCACCAGATCCGTAAGGAGAAGCTCCGCCTCCAAGGCTTCGACCCACAGCCACATCCACCGTCGTTAGTCGGAATTGACGATGACAACGACGACCAATCCGCTGTCCACCATGTCTACGACTCCACCGGAATTTTATCCGAAATGTTCAATTTCCCTCCGCCTCCACCACCACAGCCACCGCAAACCGACTGGTACGGTAACCGGCAAACAATCAACGCGGCCGACTCGGCTGTCGCCATGCAGCTTTTTCTAATGAACCCGAATCCCCGGTCGCCGTCTCCGCCACCGCCACCACCTTCCTCAACACTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGTTCCAGAGCAAGAAACAGGTGACCATTCTTCATCAAACCCTAACGAAGGCCGTCTTTCGTTGTCATTGTCATCGTCTTTGGAAGCTGCAAAAGCCGAGGAATTGAGAATGGGTGACAGCACCAACGGGTTACTTTATCATCACCACCATCAGCCTCAACATGTACATGTCGGATCAATTGGGTCCTCCAATCCACTGGGAGTCGTCAACTTATTGAGAAACTCAAAATATGTCAAAGCTGCACAAGAATTATTAGAGGAATTTTGTAGCGTGGGAAGAGGTCAGTTTAAGAAAAATAATAATCATGATAACAAATTTAATAATAAATCAAATTTGCCCTCCAACTCCAATTCCCACGGCGGTGGCGGCGACGGTACCGGTGTTTCTTCCTCTTCGACAAAGGATCATCAGCCAGCTTTGTCAGCAGCTGATAGGATTGACCATCAAAGAAGGAAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTAGTAAATTCATTCGACGAGGTGATGGGGTTTGGAGCGGCGGTGCCATACACATCGTTGGCGCAAAAGGCGATGTCGAGACATTTCAGGTGTCTAAAGGACGTTATATCAGCGCAGTTGAAGCATAGTTGCGAGATGTTGGGAGAGAAAGATGGAGGAGTAAGTGGAAGGGCCTCAGGAATAACAAAGGGTGAGACTCCAAGGCTAAAGCTCTTGGAGCAAAGCCTTAGGCAGCAACGAGCTTTCCACCAAATGGGCATTATGGAACAAGAAGCTTGGCGTCCCCAACGCGGTTTACCCGAACGCTCTGTCAACATCTTACGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTACCCTAGCGATGCTGATAAACATTTGTTGGCTAGGCAGACTGGTTTGTCAAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAACAAGATGATGATGATGATGATAATAATACGGATGAAGACACACAAACCAACTCTCAACAAATTACCACTAATAATAATCCTCTTTCACAAACTCCAACGCCGCCTACTTCCTCCGCCGCACCACCACCCCCCTCCTCCTCCGCCGCGTCTCCACCCAAAATACCCGATCACCCTTCACCCTTCTCCGCCGCCGCTACCCACTGCTTTCCGGCTACCCATTATGACTCAGACCTCCACGACACGTGTCGTCGCCTCACCGTTCTCCCTGCACCTGATCTTCAATTCGGGACCACAACCTCTTCTGCCACGTCTGACATCCCCGGCCCCACCACCCTCATAAGGTTCGGGACCACCGCCGGTGACGTGTCGCTCACACTAGGTTTACGCCATGCCGGAAATATCCCCGATAAAACCTCTTCTTTCTCCCTCAGATCCGAGTTTGGAGGCTGTTAG | 2712 | 50.92 | MSQQDYQQAAAAAAAAGFFTPFCNGYDRSSTAHQDSQQHYQHIAHQIRKEKLRLQGFDPQPHPPSLVGIDDDNDDQSAVHHVYDSTGILSEMFNFPPPPPPQPPQTDWYGNRQTINAADSAVAMQLFLMNPNPRSPSPPPPPPSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSTNGLLYHHHHQPQHVHVGSIGSSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRDYQQAAAAAAAAGFFTPFCNGYDRSSTAHQDSQQHYQHIAHQIRKEKLRLQGFDPQPHPPSLVGIDDDNDDQSAVHHVYDSTGILSEMFNFPPPPPPQPPQTDWYGNRQTINAADSAVAMQLFLMNPNPRSPSPPPPPPSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSTNGLLYHHHHQPQHVHVGSIGSSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKKNNNHDNKFNNKSNLPSNSNSHGGGGDGTGVSSSSTKDHQPALSAADRIDHQRRKVDRRYNHYCEQMQMVVNSFDEVMGFGAAVPYTSLAQKAMSRHFRCLKDVISAQLKHSCEMLGEKDGGVSGRASGITKGETPRLKLLEQSLRQQRAFHQMGIMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKQDDDDDDNNTDEDTQTNSQQITTNNNPLSQTPTPPTSSAAPPPPSSSAASPPKIPDHPSPFSAAATHCFPATHYDSDLHDTCRRLTVLPAPDLQFGTTTSSATSDIPGPTTLIRFGTTAGDVSLTLGLRHAGNIPDKTSSFSLRSEFGGC | 903 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 26728274 | 26735113 | - | ClCG02G012970.1 | Cla02g01273 | 267399 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g01273 | 903 | MobiDBLite | consensus disorder prediction | 56 | 77 | - | - | |
Cla02g01273 | 903 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 328 | 890 | - | - | |
Cla02g01273 | 903 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 68 | 308 | - | - | |
Cla02g01273 | 903 | Gene3D | - | 685 | 747 | - | - | |
Cla02g01273 | 903 | MobiDBLite | consensus disorder prediction | 750 | 814 | - | - | |
Cla02g01273 | 903 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 2 | 328 | 890 | - | - | |
Cla02g01273 | 903 | MobiDBLite | consensus disorder prediction | 132 | 148 | - | - | |
Cla02g01273 | 903 | MobiDBLite | consensus disorder prediction | 129 | 153 | - | - | |
Cla02g01273 | 903 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 2 | 68 | 308 | - | - | |
Cla02g01273 | 903 | MobiDBLite | consensus disorder prediction | 766 | 786 | - | - | |
Cla02g01273 | 903 | MobiDBLite | consensus disorder prediction | 528 | 561 | - | - | |
Cla02g01273 | 903 | MobiDBLite | consensus disorder prediction | 787 | 811 | - | - | |
Cla02g01273 | 903 | SMART | prehox3 | 489 | 627 | IPR006563 | - | |
Cla02g01273 | 903 | MobiDBLite | consensus disorder prediction | 388 | 404 | - | - | |
Cla02g01273 | 903 | MobiDBLite | consensus disorder prediction | 385 | 409 | - | - | |
Cla02g01273 | 903 | Pfam | Associated with HOX | 239 | 302 | IPR006563 | - | |
Cla02g01273 | 903 | Pfam | Associated with HOX | 495 | 626 | IPR006563 | - | |
Cla02g01273 | 903 | ProSiteProfiles | 'Homeobox' domain profile. | 679 | 742 | IPR001356 | GO:0003677 | |
Cla02g01273 | 903 | MobiDBLite | consensus disorder prediction | 751 | 765 | - | - | |
Cla02g01273 | 903 | Pfam | Homeobox KN domain | 699 | 738 | IPR008422 | GO:0003677|GO:0006355 | |
Cla02g01273 | 903 | CDD | homeodomain | 682 | 743 | IPR001356 | GO:0003677 | |
Cla02g01273 | 903 | SUPERFAMILY | Homeodomain-like | 684 | 749 | IPR009057 | - | |
Cla02g01273 | 903 | MobiDBLite | consensus disorder prediction | 519 | 572 | - | - | |
Cla02g01273 | 903 | SMART | HOX_1 | 682 | 746 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01273 | Cla-Chr2:26728274 | Cla10g01741 | Cla-Chr10:33296516 | 5.86E-79 | dispersed | |
Cla01g00239 | Cla-Chr1:2404412 | Cla02g01273 | Cla-Chr2:26728274 | 2.21E-83 | transposed | |
Cla01g01594 | Cla-Chr1:30651707 | Cla02g01273 | Cla-Chr2:26728274 | 6.36E-23 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60656 | PF07526 | POX | 2.70E-40 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g01273 | - | - | csv:101212977 | 904.82 |