Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01308 ATGGGCATTAAAAAGGGACAGTACAGGGACAAAGAGTGGTTGAAGAGAAAAAAGAGGATGTCATCATCAAATTCACCATGTGCGGCGTGCAAAATCCAGAGAAGAAAATGCACACAAGAATGCGTATTTGCACCATACTTCCCACCGGATCAGCCACAGAAATTCGCCAACGTCCACAAAGTATTCGGTGCAAGTAACGTAGCCAAACTTTTAAACGAACTGAACGCAACACAACGTGAAGACGCGGTTAATTCATTAGCCTACGAAGCCGAGTTCCGTTTACGTGACCCAGTCTACGGTTGCGTTGGCTTAATCTCCGTCCTTCAACACAAACTCAAACAAATGCAAAGCGATCTCTACAATGCTAAAAAAGAACTGGCCTCTTATATTGGTCCTCAAGCCATGCTCCCAATTCTCCAACCACAACCACAACCACCCACACCAACCCCTTCCTCCTCCGCTTTACTTCCCTACAATATCTCTCCTATGTTAGCCATTCCCCCTTCCGCCGCCCCTGGCTCTTCCCAACAGATGCTCATTCCTCCTCAACACCAAATGCAGCAGCAGCAGCAGCAGCAGCAGTTATTCGAGGCTCAACAATTGGCCGCGGCTGTAGCTGCCAGAGAGCAACAAGAAATGTTCAGAGCTTATGAGCATAAACAATCCCACCACCACCAACAACAACAACAACGCCAACATGAGCTTTTGAGATTCAATGGGTTTGATGCTGGTGGTGGATTTAATAATCAAATGAATTCTTCTCCCTCTAATTTGACTTTGGGGACTTTTGTTGATAACACCTACCAAATTCAAACACAACCTGAACATTCACATTCCCATTCCCATTCACATTCGCATTCGCATTCCCCGCTTCAAGTACAGCTGTTTCTTCAACCTCAACAAACTCAGCTTGATCAACCACAGCACCCTCATCCACATCAATCCCACAAGCCTGAAACTACTCCTGCTGATGATGGTAGGAATAATAATATTAACATTGGCCCCTCTTGTTAA 1014 45.56 MGIKKGQYRDKEWLKRKKRMSSSNSPCAACKIQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPQPQPPTPTPSSSALLPYNISPMLAIPPSAAPGSSQQMLIPPQHQMQQQQQQQQLFEAQQLAAAVAAREQQEMFRAYEHKQSHHHQQQQQRQHELLRFNGFDAGGGFNNQMNSSPSNLTLGTFVDNTYQIQTQPEHSHSHSHSHSHSHSPLQVQLFLQPQQTQLDQPQHPHPHQSHKPETTPADDGRNNNINIGPSC 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27234597 27237686 + ClCG02G013300.2 Cla02g01308 267434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01308 337 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 20 299 - -
Cla02g01308 337 MobiDBLite consensus disorder prediction 302 337 - -
Cla02g01308 337 MobiDBLite consensus disorder prediction 272 291 - -
Cla02g01308 337 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 20 299 - -
Cla02g01308 337 ProSiteProfiles LOB domain profile. 25 126 IPR004883 -
Cla02g01308 337 Coils Coil 105 125 - -
Cla02g01308 337 Pfam Lateral organ boundaries (LOB) domain 26 123 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01308 Cla-Chr2:27234597 Cla11g01084 Cla-Chr11:21962719 3.67E-57 dispersed
Cla02g01308 Cla-Chr2:27234597 Cla06g01688 Cla-Chr6:30476051 6.95E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60664 PF03195 LOB 2.80E-41 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01308 - - cmos:111434896 349.362