Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g01308 | ATGGGCATTAAAAAGGGACAGTACAGGGACAAAGAGTGGTTGAAGAGAAAAAAGAGGATGTCATCATCAAATTCACCATGTGCGGCGTGCAAAATCCAGAGAAGAAAATGCACACAAGAATGCGTATTTGCACCATACTTCCCACCGGATCAGCCACAGAAATTCGCCAACGTCCACAAAGTATTCGGTGCAAGTAACGTAGCCAAACTTTTAAACGAACTGAACGCAACACAACGTGAAGACGCGGTTAATTCATTAGCCTACGAAGCCGAGTTCCGTTTACGTGACCCAGTCTACGGTTGCGTTGGCTTAATCTCCGTCCTTCAACACAAACTCAAACAAATGCAAAGCGATCTCTACAATGCTAAAAAAGAACTGGCCTCTTATATTGGTCCTCAAGCCATGCTCCCAATTCTCCAACCACAACCACAACCACCCACACCAACCCCTTCCTCCTCCGCTTTACTTCCCTACAATATCTCTCCTATGTTAGCCATTCCCCCTTCCGCCGCCCCTGGCTCTTCCCAACAGATGCTCATTCCTCCTCAACACCAAATGCAGCAGCAGCAGCAGCAGCAGCAGTTATTCGAGGCTCAACAATTGGCCGCGGCTGTAGCTGCCAGAGAGCAACAAGAAATGTTCAGAGCTTATGAGCATAAACAATCCCACCACCACCAACAACAACAACAACGCCAACATGAGCTTTTGAGATTCAATGGGTTTGATGCTGGTGGTGGATTTAATAATCAAATGAATTCTTCTCCCTCTAATTTGACTTTGGGGACTTTTGTTGATAACACCTACCAAATTCAAACACAACCTGAACATTCACATTCCCATTCCCATTCACATTCGCATTCGCATTCCCCGCTTCAAGTACAGCTGTTTCTTCAACCTCAACAAACTCAGCTTGATCAACCACAGCACCCTCATCCACATCAATCCCACAAGCCTGAAACTACTCCTGCTGATGATGGTAGGAATAATAATATTAACATTGGCCCCTCTTGTTAA | 1014 | 45.56 | MGIKKGQYRDKEWLKRKKRMSSSNSPCAACKIQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPQPQPPTPTPSSSALLPYNISPMLAIPPSAAPGSSQQMLIPPQHQMQQQQQQQQLFEAQQLAAAVAAREQQEMFRAYEHKQSHHHQQQQQRQHELLRFNGFDAGGGFNNQMNSSPSNLTLGTFVDNTYQIQTQPEHSHSHSHSHSHSHSPLQVQLFLQPQQTQLDQPQHPHPHQSHKPETTPADDGRNNNINIGPSC | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 27234597 | 27237686 | + | ClCG02G013300.2 | Cla02g01308 | 267434 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g01308 | 337 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 36-LIKE | 20 | 299 | - | - | |
Cla02g01308 | 337 | MobiDBLite | consensus disorder prediction | 302 | 337 | - | - | |
Cla02g01308 | 337 | MobiDBLite | consensus disorder prediction | 272 | 291 | - | - | |
Cla02g01308 | 337 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 20 | 299 | - | - | |
Cla02g01308 | 337 | ProSiteProfiles | LOB domain profile. | 25 | 126 | IPR004883 | - | |
Cla02g01308 | 337 | Coils | Coil | 105 | 125 | - | - | |
Cla02g01308 | 337 | Pfam | Lateral organ boundaries (LOB) domain | 26 | 123 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01308 | Cla-Chr2:27234597 | Cla11g01084 | Cla-Chr11:21962719 | 3.67E-57 | dispersed | |
Cla02g01308 | Cla-Chr2:27234597 | Cla06g01688 | Cla-Chr6:30476051 | 6.95E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60664 | PF03195 | LOB | 2.80E-41 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g01308 | - | - | cmos:111434896 | 349.362 |