Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01324 ATGAAAATGGTACTCGAAGTTGCGGTCAAGGCTGCCACTGGTGCACCTGATGTGCTTGGGGACTGCCCTTTCTGCCATAGAGTTCTCTTAACTTTGGAGGAGAAGAAAGTTCCTTACAAATGGCATCTCATCAATCTATCCGAAAAACCCAGTTGCCGGAGAAAAAGGGTGTTAATCAAATGGGGTTGTGTGTGGATTTTTGATGATTTTGGCAGGTTATTTGAAGTGAGCCCAGAAGGGAAGGTGCCGTTGGCGAAGTTTGATGGCAAATGGGTTCCTGATTCTGATGTCATAGTGGGGATTCTTGAGGAGAAGTATCCAGAGCCTTCTCTTGTTACTCCTCCTGAATTTTCTTCTGTGGGATCAAAGATGTTTGGTGCTTTTGTAAAATTCTTGTTAAGCAAGGACCCAAATGATGGTTCAGAGCAGGCTTTCCTTGAAGAGTTGAAGGCGCTCAATGAGCATCTTAAGGCTCATGGTCCTTATGTTGCTGGAGAGAAGGTAACTGCTGTTGATTTGAGCCTGGCACCAAAGTTGTACCATGTTGATGTTGCTCTTGGCCATTTTAAGAAGTGGTCTATCCCTAAAGACTTGCCCAGTTTAATCGCCTACAAGGAGGCTTCGCTAGCTTCTCAGATTGCCTACAGTTTGAAACCTATGATTCTGGTTGGTTTCTGCTCCATTAAACTCGAACCTGCATTGCTTTACACTCGAGAATCTTTCGTGAAGACGAAAACTGCCCCGGAATATGTAATTGCTGGATGGGGGACCAAGGTGAATCCTGCATGA 789 44.99 MKMVLEVAVKAATGAPDVLGDCPFCHRVLLTLEEKKVPYKWHLINLSEKPSCRRKRVLIKWGCVWIFDDFGRLFEVSPEGKVPLAKFDGKWVPDSDVIVGILEEKYPEPSLVTPPEFSSVGSKMFGAFVKFLLSKDPNDGSEQAFLEELKALNEHLKAHGPYVAGEKVTAVDLSLAPKLYHVDVALGHFKKWSIPKDLPSLIAYKEASLASQIAYSLKPMILVGFCSIKLEPALLYTRESFVKTKTAPEYVIAGWGTKVNPA 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27422408 27426190 - ClCG02G013470.1 Cla02g01324 267450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01324 262 SUPERFAMILY GST C-terminal domain-like 106 208 IPR036282 -
Cla02g01324 262 Gene3D - 112 262 - -
Cla02g01324 262 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 4 256 IPR044627 GO:0033355|GO:0045174|GO:0098869
Cla02g01324 262 SUPERFAMILY Thioredoxin-like 21 110 IPR036249 -
Cla02g01324 262 Pfam Glutathione S-transferase, C-terminal domain 140 204 - -
Cla02g01324 262 CDD GST_N_family 22 99 - -
Cla02g01324 262 Pfam Glutathione S-transferase, N-terminal domain 22 104 IPR004045 -
Cla02g01324 262 Gene3D Glutaredoxin 3 111 - -
Cla02g01324 262 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 12 110 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01324 K21888 DHAR; glutathione dehydrogenase/transferase [EC:1.8.5.1 2.5.1.18] - cmax:111483829 325.479
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01324 Cla-Chr2:27422408 Cla05g01223 Cla-Chr5:13795738 3.38E-77 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g00568 . 234 442 Glutathione S-transferase Gene Family AT4G02520 57.1 7.2e-64 240.7
Cla09g00567 . 1 220 Glutathione S-transferase Gene Family AT4G02520 51.6 2.3e-54 209.1
Cla09g00566 . 47 236 Glutathione S-transferase Gene Family AT4G02520 54.5 5.2e-54 208.0
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT2G02930 57.3 2.1e-63 239.2
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT2G02930 56.5 6.5e-57 217.6
Cla09g00567 . 1 221 Glutathione S-transferase Gene Family AT2G02930 52.2 2.1e-55 212.6
Cla09g00566 . 52 241 Glutathione S-transferase Gene Family AT1G02950 51.2 9.3e-50 194.1
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT1G02930 54.8 2.5e-61 232.3
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT1G02930 51.9 4.3e-53 204.9
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT1G02920 55.2 2.3e-62 235.7
Cla09g00567 . 1 221 Glutathione S-transferase Gene Family AT1G02920 50.2 2.3e-54 209.1
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT1G02920 54.0 3.0e-54 208.8
Cla09g00568 . 233 448 Glutathione S-transferase Gene Family AT2G47730 57.6 1.0e-67 253.8
Cla09g00567 . 1 225 Glutathione S-transferase Gene Family AT2G47730 51.8 2.8e-57 219.2
Cla09g00566 . 50 241 Glutathione S-transferase Gene Family AT2G47730 53.5 1.8e-56 216.5
Cla09g00568 . 1 208 Glutathione S-transferase Gene Family AT3G62760 58.2 7.4e-72 267.3
Cla04g00746 . 224 421 Glutathione S-transferase Gene Family AT3G09270 52.8 1.4e-57 219.9
Cla05g00265 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.4e-57 219.9
Cla07g01007 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 5.7e-88 320.9
Cla01g00840 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.0 1.5e-67 253.1
Cla07g01008 . 102 255 Glutathione S-transferase Gene Family AT1G78380 59.9 2.3e-49 192.6
Cla07g01007 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.6e-80 294.3
Cla01g00840 . 7 220 Glutathione S-transferase Gene Family AT1G78370 53.7 1.4e-62 236.5
Cla07g01008 . 103 242 Glutathione S-transferase Gene Family AT1G78370 55.7 2.3e-41 166.0
Cla07g01007 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 2.5e-80 295.4
Cla01g00840 . 4 218 Glutathione S-transferase Gene Family AT1G78340 53.5 6.3e-63 237.7
Cla07g01008 . 98 242 Glutathione S-transferase Gene Family AT1G78340 56.6 1.1e-43 173.7
Cla07g01007 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 6.8e-61 230.7
Cla07g01007 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 9.4e-91 330.1
Cla01g00840 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.8 4.3e-67 251.5
Cla07g01008 . 113 242 Glutathione S-transferase Gene Family AT1G17180 63.8 1.9e-46 183.0
Cla07g01007 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.8 1.9e-75 279.3
Cla07g01007 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 1.2e-72 270.0
Cla07g01007 . 1 218 Glutathione S-transferase Gene Family AT1G53680 58.3 6.4e-71 264.2
Cla01g00840 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 1.3e-63 240.0
Cla07g01008 . 115 243 Glutathione S-transferase Gene Family AT1G53680 58.0 1.3e-39 160.2
Cla02g00037 . 88 254 Glutathione S-transferase Gene Family AT2G02390 68.3 1.0e-61 233.4
Cla05g00238 . 712 875 Glutathione S-transferase Gene Family AT2G02390 51.5 6.8e-45 177.6
Cla02g00037 . 45 257 Glutathione S-transferase Gene Family AT2G02380 64.3 1.3e-76 283.1
Cla05g00238 . 669 874 Glutathione S-transferase Gene Family AT2G02380 53.1 1.4e-57 219.9
Cla07g00766 . 37 265 Glutathione S-transferase Gene Family AT5G41210 65.4 4.5e-86 314.7
Cla07g00766 . 37 265 Glutathione S-transferase Gene Family AT5G41240 63.7 6.6e-83 305.4
Cla02g01351 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.6e-80 295.0
Cla10g01965 . 392 610 Glutathione S-transferase Gene Family AT5G02780 64.4 9.2e-76 280.4
Cla02g01351 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.2e-85 313.5
Cla10g01965 . 384 610 Glutathione S-transferase Gene Family AT5G02790 65.5 7.7e-83 303.9
Cla02g01351 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.8e-82 301.6
Cla02g01324 . 3 261 Glutathione S-transferase Gene Family AT1G19570 54.2 7.2e-72 267.3
Cla05g01223 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.4 9.5e-72 266.9
Cla02g01324 . 3 260 Glutathione S-transferase Gene Family AT1G75270 57.9 8.8e-78 287.0
Cla05g01223 . 65 274 Glutathione S-transferase Gene Family AT1G75270 61.6 4.1e-75 278.1
Cla05g01223 . 9 271 Glutathione S-transferase Gene Family AT5G16710 68.3 1.4e-101 366.3
Cla11g01560 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.9e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003067 2 1 1 1 2 1 3 1 1 1 1 1 3 1 1 4 1 2 2 1 1 2 2 3 2 1 2 5 2 0 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01324 Cla_Chr02 FPKM 27.856447 28.540173 24.902596 25.75791 19.626022 15.279455 17.865805 33.849506 33.059258 40.37923