Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01342 ATGGCCGTTCCACCAACTGTGGGCCTTCTTCTGATCATCTTCATTGTTAATCTCGAAATTATTTTCTCTGTGAGAGCTGCTGCCATGAGAGCTTCAAATCCCTATTTTCTCATCTGGATTCTTTGTGCTTTGTGTTTATCATCATCTCTCTCATCAGAATTCACTCCCGATGATAATTTTCTGATCGATTGTGGATCATCCTCCAATAGTACAGTGGAAGGTCGTTTATTTCTATCTGATGATTCCAACCCAAATGGGAAATCTCTTTCCACTACAAGCAATGTATCTAGTTCATCTCCATTATACTTGTTCTCACCTCTATTTAGAACTGCAAAAGTATTTGAAACAACTTCCCAATACAACTTCAAAATTAAGAAACAGGGCAGGCACTGGATCCGCCTATACTTTTACCCTTTTGTTTCTGGGAACTTCAGCTTGAGTTTAGCCAAATTCTCAGTTTCTGCTCAAAATATCACCCTTCTCAAAGAGTTTCAAATCGACAGTGGCTCGGTAATCAAGGAATATTCTTTGAATGTCACTTCCAGTAATCTTGTTCTTACATTTACTCCCATGGTGAATTCATTTGCCTTCATCAATGCCTTGGAAGTTGTTTCTGTTCCTAATGAACTGATTCCCTCAACTATCACCAGTGTTGAGAAGGTCAAAATTAGTTTGGAGAACAGGGTATTGGAGACAGTTGCTAGAGTGAATATGGGCAATGAAACCGTGTTGCCGAATGACGATATTCTCTCACGCCTTTGGGTTGCAGATGGTCCATTCTTGATGCATAATGATCAGGTTGTCGTCGGAAAGTTTGTGTCAAATCTCACAAAAGTGAATATGACAAGAGGTTCTGAAATTGAGGCTCCTCGTTTTGTGTATGGCACAGCAACTCGGTTAGGAGCTGATGTGGATGCGAATGCTAATGTCAATGTATCGTGGTCATTCGACATTGATCTGGGATATGAATATCTGATTCGTTATCATTTCTGCGATATTATTGATCTTTTTCTTGGACCAATTTCATTCAATGTTTATGTTAACTCGTGGAAGGTTAAAGATCATCTTGATCTTAGTAGTCTCACTTCACATATCCCAGGTGCACCCTATGTCCTGGACACTATAGCCAGTCCAATTGACAGCTCTAAGTTCAAAATAAGTGTTGGCCCTTCCAATTTTCATGAGTATTCAGCTGCCATTCTTAACGGGCTCGAGATCATGAAAATTAGTGATTCTCGGAGGAGCCTCGATGAACCCTCTGGTTTACACTCAAAGAAAGGTTCCAATGTTAAAGTTGGTCTTATAGCAGGCTTGGTAGCTGGACTGCTTGTTCTTGTTGTTTTGGCCACTCTTGTCATTGTGCTGTGCAGAAGAAGGAGATCCGCGCTTGTTCGTCACTTGAAGGAAGAGGAAAATTTTGGTGCGAATGGTAGAGAAAGCAACTACATCATTGGATCTGTTGCCTTTTCGAACTCAAAAATCAGTTATCGATATCCTCTTGCAGCTATTCAGGAAGCTACAGGTCATTTTAGTGAAAGTTTAGTCATTGGCCTTGGTGGGTTTGGGAAAGTTTACAAGGGGATGTTGAGGGACAACACAGAAGTGGCAGTGAAAAGAGGAACTTCTAAATCCCAGCAGGGTCTTGCAGAGTTTCAAACTGAAATTGAGATGTTATCCCAGTTTCGCCACCGTCATTTAGTTTCTCTGATTGGGTACTGCGACGAGCAAAACGAGATGATTATAATTTATGAGTACATGGAAAAAGGGACCCTCAAGGACCATTTGTATGGATCAGAACTTCCAAGTTTAAGCTGGAAACAAAGGCTTGATATTTGCATTGGCTCAGCTAGAGGACTTCATTATCTTCACACTGGCTCCACAAAGGCAATCATACACAGAGATGTCAAAACTGCAAACATTCTTCTTGATCAAAACTACATGGCCAAAGTTGCAGACTTCGGACTCTCGAAGATTGGCCCCGAATTCGACAAGACTCATGTCAGTACAGCAGTGAAAGGAAGCTTCGGCTATCTCGATCCCGAGTATTTAACGACGCAGCAACTGACCGAGAAATCAGACGTGTACTCTTTTGGGGTGGTTATGTTTGAAGTCCTTTGTGGTAGGCCTGTCATTGATCCATCTCTTCCAAGGGAAAAAGTGAATTTAATTGAATGGGTAATGAGGAGGAAGGACAGAGATCAACTGGAGGCGATAGTAGACGCTCGCATTGTCGAGCAAATCAAGCTAGAATCTCTGAAAAAATATGTAGAGACGGCCGAGAAATGCTTGGCAGAATGTGGAATGGATCGTCCGACAATGGGAAACGTTCTATGGAATCTGGAGTGTGCTCTCCAGCTCCAAGGGGACGAAAAATCTCGTCATGGAAAGGAATCATCCTCACAAGCTGATCTTTCCAACCACTGGGAGGCGAGCGTATCAACGACTCAATTCAGCACGGGAAGTGCGGTCGATATCGCGGGTATTTCGATGAGTAAGGTATTTGCTCAAATGGTGAGGGAAGATATGAGATAG 2532 42.22 MAVPPTVGLLLIIFIVNLEIIFSVRAAAMRASNPYFLIWILCALCLSSSLSSEFTPDDNFLIDCGSSSNSTVEGRLFLSDDSNPNGKSLSTTSNVSSSSPLYLFSPLFRTAKVFETTSQYNFKIKKQGRHWIRLYFYPFVSGNFSLSLAKFSVSAQNITLLKEFQIDSGSVIKEYSLNVTSSNLVLTFTPMVNSFAFINALEVVSVPNELIPSTITSVEKVKISLENRVLETVARVNMGNETVLPNDDILSRLWVADGPFLMHNDQVVVGKFVSNLTKVNMTRGSEIEAPRFVYGTATRLGADVDANANVNVSWSFDIDLGYEYLIRYHFCDIIDLFLGPISFNVYVNSWKVKDHLDLSSLTSHIPGAPYVLDTIASPIDSSKFKISVGPSNFHEYSAAILNGLEIMKISDSRRSLDEPSGLHSKKGSNVKVGLIAGLVAGLLVLVVLATLVIVLCRRRRSALVRHLKEEENFGANGRESNYIIGSVAFSNSKISYRYPLAAIQEATGHFSESLVIGLGGFGKVYKGMLRDNTEVAVKRGTSKSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEQNEMIIIYEYMEKGTLKDHLYGSELPSLSWKQRLDICIGSARGLHYLHTGSTKAIIHRDVKTANILLDQNYMAKVADFGLSKIGPEFDKTHVSTAVKGSFGYLDPEYLTTQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKVNLIEWVMRRKDRDQLEAIVDARIVEQIKLESLKKYVETAEKCLAECGMDRPTMGNVLWNLECALQLQGDEKSRHGKESSSQADLSNHWEASVSTTQFSTGSAVDIAGISMSKVFAQMVREDMR 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27675668 27678937 + ClCG02G013650.1 Cla02g01342 267468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01342 843 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Cla02g01342 843 SMART serkin_6 510 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01342 843 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 44 835 - -
Cla02g01342 843 Gene3D Phosphorylase Kinase; domain 1 476 585 - -
Cla02g01342 843 ProSiteProfiles Protein kinase domain profile. 510 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g01342 843 PANTHER OS07G0166700 PROTEIN 44 835 IPR045272 GO:0004714|GO:0006468
Cla02g01342 843 Pfam Malectin-like domain 62 409 IPR024788 -
Cla02g01342 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Cla02g01342 843 Gene3D Transferase(Phosphotransferase) domain 1 586 808 - -
Cla02g01342 843 Pfam Protein tyrosine and serine/threonine kinase 515 774 IPR001245 GO:0004672|GO:0006468
Cla02g01342 843 CDD STKc_IRAK 516 781 - -
Cla02g01342 843 Gene3D - 59 207 - -
Cla02g01342 843 Gene3D - 229 410 - -
Cla02g01342 843 SUPERFAMILY Protein kinase-like (PK-like) 492 780 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01342 Cla-Chr2:27675668 Cla02g02009 Cla-Chr2:35069904 0 dispersed
Cla02g01342 Cla-Chr2:27675668 Cla11g01796 Cla-Chr11:31629607 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80350 PF12819 Malectin_like 1.90E-30 CL0202 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01342 - - csv:101203398 1363.21