Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01350 ATGGTATCTGAAACTTTGATGAAGATTGTATCACCTTGCTGGAAACCCTTGGTTGAAGGCGAAAATTCCAGTAGAGGTGGGGATGCAAGTGGTCGGGTTGACGGGCTGTTGTGGTACAAGGATTCTGGCCGCCATATTAATGGGGAATTCTCAATGGCAGTTATTCAGGCAAATAATTTGTTGGAAGATCGTAGCCAACTTGAGTCAGGACCACTGAGCTCATTTGAATCGGGTCCCGTTGGAACGTTTGTTGGAATTTATGATGGCCATGGAGGACCAGAAGCTGCAGAATTCATAAATGATCGTCTTTTCAATAATATGAAGAAATTTATTCCAGAAAATCGGGGGGTATCTGCTGAAATTATTAATAAAGCATTCTTGGAGACGGAGGAGGAATTTTTGTCTCTTGTAAAGAAACAATGGCTTATGAAGCCTCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGGAGATTTGAAAAAACTCATAAAGAGGTTAAAGCCATCCAATTGTCATCTGAGCACAATGCTAGTATTGAATCTGTGAGAGAGGAGCTGCACTCGTTGCATCCCAATGATCCACAGATTGTGGTGCTAAAGCACAAGGTGTGGCGCGTGAAGGGCGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACAGAGTTCAACCAAGAGCCTCTTTTGCCGAAGTTCAGACTACCAGAACCATTCCACAAGCCAATACTTAAAGCCGAGCCTGCTATTGTAGTGCAGAAACTGTACCCAGAGGATCAGTTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGACATCGTCCATAGTTGTCCACGTAACAAGTACAGCCTCCCTCTGTGGGAAAGGATTTCTTGCCATTGGCAAGCTATCGGAGCAATCATACCAATGGCTGAAGTCTTGGAAGGAAGTTTGGGGGTTGCTAGGAAACTCGTTAAAGCCGCTCTTCATGAAGCTGCAAAGAAAAGAGAAATGAGATATACAGACTTGAAGAAGATTGACCGCGGGGTAAGAAGGCATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTCGATTCACATCTGATTAGTCGCAGTCCAAGCTACGGACCAATGCTTTCAATCAGAGGAGGTTCTGGTATCCTCGCTAGATCATAG 1248 43.51 MVSETLMKIVSPCWKPLVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSFESGPVGTFVGIYDGHGGPEAAEFINDRLFNNMKKFIPENRGVSAEIINKAFLETEEEFLSLVKKQWLMKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNQEPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNKYSLPLWERISCHWQAIGAIIPMAEVLEGSLGVARKLVKAALHEAAKKREMRYTDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSYGPMLSIRGGSGILARS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27751689 27757023 + ClCG02G013720.1 Cla02g01350 267476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01350 415 SMART PP2C_4 41 386 IPR001932 -
Cla02g01350 415 PANTHER ALPHABET, ISOFORM E-RELATED 8 310 - -
Cla02g01350 415 PANTHER ALPHABET, ISOFORM E-RELATED 340 410 - -
Cla02g01350 415 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 310 - -
Cla02g01350 415 SUPERFAMILY PP2C-like 58 389 IPR036457 -
Cla02g01350 415 Gene3D - 39 396 IPR036457 -
Cla02g01350 415 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Cla02g01350 415 ProSiteProfiles PPM-type phosphatase domain profile. 49 388 IPR001932 -
Cla02g01350 415 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 340 410 - -
Cla02g01350 415 CDD PP2Cc 50 388 IPR001932 -
Cla02g01350 415 Pfam Protein phosphatase 2C 82 312 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00410 Cla-Chr2:4009353 Cla02g01350 Cla-Chr2:27751689 1.53E-125 dispersed
Cla02g01350 Cla-Chr2:27751689 Cla10g00051 Cla-Chr10:559323 1.17E-171 dispersed
Cla10g01967 Cla-Chr10:35506658 Cla02g01350 Cla-Chr2:27751689 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01350 K01102 - csv:101220760 723.391