Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01351 ATGGCGACTTCGACACTGGGCGGCACCATAGGCTTCTCCCAGCCCTCGTCTTCCTCGCATATCTCAGTTTATTGCATTCCCTTTTCAACCAGCAGATTCAGTTTCTCGAGGACCATTCTTTCTCCTCTCAAGCTTGAAAAACCACCATCTGGAAGAAGAGCCAGAGCTGTAATTGCTGTGAAAATGGCTGCTGAGGCTTTTCAGGAAGTTTTTCCTCCAGCCCTCACTTCAGCTTCAGAACCACCTCCTCTCTTTGATGGAACAACGAGGCTTTACATATCTTATACATGCCCTTATGCGCAGCGTGTGTGGATTACTCGGAATTGTAAGGGTTTGCAGAATAAGATACAATTGGTTCCAATAAATCTACAGGATAGGCCATCTTGGTACATGGAAAAAGTTTACCCACCTAACAAGGTGCCAGCTCTTGAACATAATAATGAGGTCAAAGGAGAGAGTCTTGACTTAATTAAATATATTGACAGCAATTTTGAAGGGCCTTCATTATTTCCTGATGATCCGGGAAAGCGAGAGTTTGCTGAAGAGCTGATAGACTACGTGAACTCTTTCACGAAATCTGTGGTTTCTTCATTTAAAGGAGATGGAAATGAAGCTGATGTGGCATTTGACTACATCGAATCTGCTCTTTCAAAATATGGAGATGGCCCGTTTTTTCTAGGCCAGTTTAGTCTGGTGGATATAGCTTATGCTCCGTTTATTGAAAGGTTTCAGCCGTTCTTATTAGAAGTAAAAACATATGACATCACTGCTGGCAGGCCAAAACTAGCAGCTTGGATTGAGGAGATGAACAAGATCGAAGGGTACCGAAAAACAAGGGGCGATCCACGGGAACATGTTGATAGCTATAAGAAGCGATTCTTGCCGTTTGTGAAAGCCACAGCAGCAGAGGGTCCCATGCCAATGGTTACCTGA 933 43.94 MATSTLGGTIGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPSGRRARAVIAVKMAAEAFQEVFPPALTSASEPPPLFDGTTRLYISYTCPYAQRVWITRNCKGLQNKIQLVPINLQDRPSWYMEKVYPPNKVPALEHNNEVKGESLDLIKYIDSNFEGPSLFPDDPGKREFAEELIDYVNSFTKSVVSSFKGDGNEADVAFDYIESALSKYGDGPFFLGQFSLVDIAYAPFIERFQPFLLEVKTYDITAGRPKLAAWIEEMNKIEGYRKTRGDPREHVDSYKKRFLPFVKATAAEGPMPMVT 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27759167 27764342 + ClCG02G013730.1 Cla02g01351 267477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01351 310 SUPERFAMILY Thioredoxin-like 78 169 IPR036249 -
Cla02g01351 310 Gene3D - 166 296 - -
Cla02g01351 310 CDD GST_C_Lambda 173 290 - -
Cla02g01351 310 SFLD Glutathione Transferase (cytosolic) 90 271 IPR040079 -
Cla02g01351 310 Pfam Glutathione S-transferase, C-terminal domain 208 267 - -
Cla02g01351 310 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 87 168 IPR004045 -
Cla02g01351 310 SFLD Main (cytGST) 90 271 - -
Cla02g01351 310 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 53 294 - -
Cla02g01351 310 PANTHER GLUTATHIONE S-TRANSFERASE L1 53 294 IPR044629 GO:0004364
Cla02g01351 310 SUPERFAMILY GST C-terminal domain-like 164 293 IPR036282 -
Cla02g01351 310 Pfam Glutathione S-transferase, N-terminal domain 91 167 IPR004045 -
Cla02g01351 310 Gene3D Glutaredoxin 62 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01351 Cla-Chr2:27759167 Cla06g01435 Cla-Chr6:27926213 8.61E-08 dispersed
Cla05g01223 Cla-Chr5:13795738 Cla02g01351 Cla-Chr2:27759167 1.08E-06 transposed
Cla11g01159 Cla-Chr11:24296123 Cla02g01351 Cla-Chr2:27759167 2.50E-32 transposed
Cla10g01965 Cla-Chr10:35475347 Cla02g01351 Cla-Chr2:27759167 9.32E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01351 K00799 - csv:101220995 525.783