Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01361 ATGTGGCGCACCATTGACGCCCATCTGAGGTCCGTACGCCTCCTTCCGAATCTCTCTGCTCATTCTTCTTCTTCTTCATCTTCAGCTTCTTCTCTCTTTTCCTCCGGCCGTTCATTTCTCGCTCGCTCGAGTTCGACTCTCCTCTCGCCTGTACCCAAGCCTCACTCGATTACTCTCTCCAAAACCCTAGCGTCTCGTTCTACCATTAATTGTTTATCGAGTGTTTCGTGTTTTGGCCTTGGAATTCAACGCTTCGGAGGATCGAGTTGCGGTGTGTTGGTGTTGGCGAAATGCATTACCTCTTCAGTGCACACGTTGGAGTGTAATGAACCAGTGTCGTGTTCGGAGGTTGGAGACGGTGGTTTTCGGAGTGTTGGGGAAGGAATTAGTGACGGTGAAGGGGATGAAGTCGAGGAGGATTCTAGACCGTCTATTCCTGTCAGAGCTTATTTCTTCTCCACTAGTGTGGATTTGAGAAGATTGGTGGATCAGAATAAACGTAACTTTATCCCGCCATCATCTCGTATGACGAATTATGTAGTCCTTAAGTTTGGGGATCTTTGTAATGTGAACACTCATGGCGCCAGCATAAGTGGAAGTGATTGCTGTTTCATGGTAGTTTTTCAGTATGGCTCAATTGTGCTGTTTAACGTTCGTGAACATGAGGTTGATGGGTATTTGAAAATTGTAGAGAAACATGCATCCGGATTGCTGCCTGAAATGAGAAAGGATGAGTATGAGGTTAGAGAGAAGCCTGCCTTAAATACATGGATGGAAGGGGGCTTGGACTACATAATGCTGCAGTACTTGAATATTGATGGCATACGTACCATAGGTAGCGTTCTTGGTCAGAGTATTGCTCTTGATTACTATGGGCGACAGGTTGATGGGATGGTTGCGGAATTCACTGACATCAACCGTGAAATGGAAGCAACTGGGAAGTTTAAAATGAAGAGGAAGAAGCTTTTCCAGTTGGTGGGAAAGGCAAATTCAAATCTTGCTGATGTCATTCTCAAGCTTGGACTTTTTGAGAGATCAGACATTGCATGGAAAGATGCAAAATATGCTCAAATATGGGAATATCTCAGAGATGAGTTTGAGTTAACACAGAGATTCGCAAGTCTGGATTTCAAATTGAAGTTTGTGGAGCATAATATTCGCTTCCTACAAGAGATTCTGCAAAACAGGAAATCAGATTTTTTGGAATGGCTGATCATTGCATTGATTGTTGGAACTGGACAGTTTTGGCTTCCTGTATCGGGTAATAACAATTCAATCGACGGGGAAGAGATAAATCGAAGCAGGGTCGGGGATACCCTCCCTGTCACCGGATGGGTATCCGGAGAATGTCTCCGATTTGACTGGGGTTTTGACTCGATCGGAGCGGAGCTCCGCGGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCACCTTCCTCGAAACTCATCCTGGCGCTTATACAACAACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGATAGGCACATGAAAAGGCTGAGTCAGTCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGACTTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTGGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCATCTGTGACCGAGCTTTTGTTGTCAAATGATGGTGATCATATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTCGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCATTCCCGATTGCGCGCCAAATACAAAAATTTCTCCTCTTTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCAGGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGATGAATCTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGGTTTATTTACTTTTTTTAAATTCTTTGTTTACAGAGAATTTCTATTCATCGTCATAG 3036 44.89 MWRTIDAHLRSVRLLPNLSAHSSSSSSSASSLFSSGRSFLARSSSTLLSPVPKPHSITLSKTLASRSTINCLSSVSCFGLGIQRFGGSSCGVLVLAKCITSSVHTLECNEPVSCSEVGDGGFRSVGEGISDGEGDEVEEDSRPSIPVRAYFFSTSVDLRRLVDQNKRNFIPPSSRMTNYVVLKFGDLCNVNTHGASISGSDCCFMVVFQYGSIVLFNVREHEVDGYLKIVEKHASGLLPEMRKDEYEVREKPALNTWMEGGLDYIMLQYLNIDGIRTIGSVLGQSIALDYYGRQVDGMVAEFTDINREMEATGKFKMKRKKLFQLVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEWLIIALIVGTGQFWLPVSGNNNSIDGEEINRSRVGDTLPVTGWVSGECLRFDWGFDSIGAELRGNGVVLQGSEAPPVATFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERLGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDHILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPIARQIQKFLLFPSSSSSSSSSSSFQDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRELECDAKGSSRGGDESAKRDPVGALPGQNSQVYLLFLNSLFTENFYSSS 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27936449 27960051 + ClCG02G013830.2 Cla02g01361 267487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01361 1011 Pfam RMND1/Sif2-Sif3/Mrx10, DUF155 205 375 IPR003734 -
Cla02g01361 1011 PANTHER REQUIRED FOR MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG 2 409 - -
Cla02g01361 1011 Pfam Amino-transferase class IV 488 762 IPR001544 GO:0003824
Cla02g01361 1011 ProSitePatterns NF-YB/HAP3 subunit signature. 909 925 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla02g01361 1011 MobiDBLite consensus disorder prediction 835 874 - -
Cla02g01361 1011 Gene3D Histone, subunit A 868 987 IPR009072 GO:0046982
Cla02g01361 1011 SUPERFAMILY Histone-fold 875 977 IPR009072 GO:0046982
Cla02g01361 1011 PANTHER OS07G0694800 PROTEIN 2 409 - -
Cla02g01361 1011 MobiDBLite consensus disorder prediction 858 872 - -
Cla02g01361 1011 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 878 942 IPR003958 -
Cla02g01361 1011 PRINTS CCAAT-binding transcription factor subunit A signature 925 943 - -
Cla02g01361 1011 PRINTS CCAAT-binding transcription factor subunit A signature 906 924 - -
Cla02g01361 1011 PRINTS CCAAT-binding transcription factor subunit A signature 944 962 - -
Cla02g01361 1011 Gene3D - 628 824 IPR043132 -
Cla02g01361 1011 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 477 768 IPR036038 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00899 Cla-Chr2:12994920 Cla02g01361 Cla-Chr2:27936449 6.25E-52 transposed
Cla03g01631 Cla-Chr3:32203447 Cla02g01361 Cla-Chr2:27936449 5.56E-32 transposed
Cla06g01497 Cla-Chr6:28511397 Cla02g01361 Cla-Chr2:27936449 4.19E-17 transposed
Cla07g00885 Cla-Chr7:24476703 Cla02g01361 Cla-Chr2:27936449 2.50E-50 transposed
Cla09g00572 Cla-Chr9:5299531 Cla02g01361 Cla-Chr2:27936449 1.34E-38 transposed
Cla09g02144 Cla-Chr9:39051807 Cla02g01361 Cla-Chr2:27936449 1.93E-117 transposed
Cla10g00404 Cla-Chr10:5486885 Cla02g01361 Cla-Chr2:27936449 1.72E-48 transposed
Cla10g00422 Cla-Chr10:5674336 Cla02g01361 Cla-Chr2:27936449 7.70E-39 transposed
Cla10g01956 Cla-Chr10:35391106 Cla02g01361 Cla-Chr2:27936449 9.77E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60666 PF01063 Aminotran_4 3.10E-14 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01361 - - cmo:103488742 708.753