Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01361 ATGTGGCGCACCATTGACGCCCATCTGAGGTCCGTACGCCTCCTTCCGAATCTCTCTGCTCATTCTTCTTCTTCTTCATCTTCAGCTTCTTCTCTCTTTTCCTCCGGCCGTTCATTTCTCGCTCGCTCGAGTTCGACTCTCCTCTCGCCTGTACCCAAGCCTCACTCGATTACTCTCTCCAAAACCCTAGCGTCTCGTTCTACCATTAATTGTTTATCGAGTGTTTCGTGTTTTGGCCTTGGAATTCAACGCTTCGGAGGATCGAGTTGCGGTGTGTTGGTGTTGGCGAAATGCATTACCTCTTCAGTGCACACGTTGGAGTGTAATGAACCAGTGTCGTGTTCGGAGGTTGGAGACGGTGGTTTTCGGAGTGTTGGGGAAGGAATTAGTGACGGTGAAGGGGATGAAGTCGAGGAGGATTCTAGACCGTCTATTCCTGTCAGAGCTTATTTCTTCTCCACTAGTGTGGATTTGAGAAGATTGGTGGATCAGAATAAACGTAACTTTATCCCGCCATCATCTCGTATGACGAATTATGTAGTCCTTAAGTTTGGGGATCTTTGTAATGTGAACACTCATGGCGCCAGCATAAGTGGAAGTGATTGCTGTTTCATGGTAGTTTTTCAGTATGGCTCAATTGTGCTGTTTAACGTTCGTGAACATGAGGTTGATGGGTATTTGAAAATTGTAGAGAAACATGCATCCGGATTGCTGCCTGAAATGAGAAAGGATGAGTATGAGGTTAGAGAGAAGCCTGCCTTAAATACATGGATGGAAGGGGGCTTGGACTACATAATGCTGCAGTACTTGAATATTGATGGCATACGTACCATAGGTAGCGTTCTTGGTCAGAGTATTGCTCTTGATTACTATGGGCGACAGGTTGATGGGATGGTTGCGGAATTCACTGACATCAACCGTGAAATGGAAGCAACTGGGAAGTTTAAAATGAAGAGGAAGAAGCTTTTCCAGTTGGTGGGAAAGGCAAATTCAAATCTTGCTGATGTCATTCTCAAGCTTGGACTTTTTGAGAGATCAGACATTGCATGGAAAGATGCAAAATATGCTCAAATATGGGAATATCTCAGAGATGAGTTTGAGTTAACACAGAGATTCGCAAGTCTGGATTTCAAATTGAAGTTTGTGGAGCATAATATTCGCTTCCTACAAGAGATTCTGCAAAACAGGAAATCAGATTTTTTGGAATGGCTGATCATTGCATTGATTGTTGGAACTGGACAGTTTTGGCTTCCTGTATCGGGTAATAACAATTCAATCGACGGGGAAGAGATAAATCGAAGCAGGGTCGGGGATACCCTCCCTGTCACCGGATGGGTATCCGGAGAATGTCTCCGATTTGACTGGGGTTTTGACTCGATCGGAGCGGAGCTCCGCGGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCACCTTCCTCGAAACTCATCCTGGCGCTTATACAACAACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGATAGGCACATGAAAAGGCTGAGTCAGTCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGACTTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTGGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCATCTGTGACCGAGCTTTTGTTGTCAAATGATGGTGATCATATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTCGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCATTCCCGATTGCGCGCCAAATACAAAAATTTCTCCTCTTTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCAGGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTTGGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGATGAATCTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGGTTTATTTACTTTTTTTAAATTCTTTGTTTACAGAGAATTTCTATTCATCGTCATAG 3036 44.89 MWRTIDAHLRSVRLLPNLSAHSSSSSSSASSLFSSGRSFLARSSSTLLSPVPKPHSITLSKTLASRSTINCLSSVSCFGLGIQRFGGSSCGVLVLAKCITSSVHTLECNEPVSCSEVGDGGFRSVGEGISDGEGDEVEEDSRPSIPVRAYFFSTSVDLRRLVDQNKRNFIPPSSRMTNYVVLKFGDLCNVNTHGASISGSDCCFMVVFQYGSIVLFNVREHEVDGYLKIVEKHASGLLPEMRKDEYEVREKPALNTWMEGGLDYIMLQYLNIDGIRTIGSVLGQSIALDYYGRQVDGMVAEFTDINREMEATGKFKMKRKKLFQLVGKANSNLADVILKLGLFERSDIAWKDAKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEWLIIALIVGTGQFWLPVSGNNNSIDGEEINRSRVGDTLPVTGWVSGECLRFDWGFDSIGAELRGNGVVLQGSEAPPVATFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERLGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDHILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPIARQIQKFLLFPSSSSSSSSSSSFQDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRELECDAKGSSRGGDESAKRDPVGALPGQNSQVYLLFLNSLFTENFYSSS 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27936449 27960051 + ClCG02G013830.2 Cla02g01361 267487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01361 1011 Pfam RMND1/Sif2-Sif3/Mrx10, DUF155 205 375 IPR003734 -
Cla02g01361 1011 PANTHER REQUIRED FOR MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG 2 409 - -
Cla02g01361 1011 Pfam Amino-transferase class IV 488 762 IPR001544 GO:0003824
Cla02g01361 1011 ProSitePatterns NF-YB/HAP3 subunit signature. 909 925 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla02g01361 1011 MobiDBLite consensus disorder prediction 835 874 - -
Cla02g01361 1011 Gene3D Histone, subunit A 868 987 IPR009072 GO:0046982
Cla02g01361 1011 SUPERFAMILY Histone-fold 875 977 IPR009072 GO:0046982
Cla02g01361 1011 PANTHER OS07G0694800 PROTEIN 2 409 - -
Cla02g01361 1011 MobiDBLite consensus disorder prediction 858 872 - -
Cla02g01361 1011 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 878 942 IPR003958 -
Cla02g01361 1011 PRINTS CCAAT-binding transcription factor subunit A signature 925 943 - -
Cla02g01361 1011 PRINTS CCAAT-binding transcription factor subunit A signature 906 924 - -
Cla02g01361 1011 PRINTS CCAAT-binding transcription factor subunit A signature 944 962 - -
Cla02g01361 1011 Gene3D - 628 824 IPR043132 -
Cla02g01361 1011 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 477 768 IPR036038 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01361 - - - cmo:103488742 708.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00899 Cla-Chr2:12994920 Cla02g01361 Cla-Chr2:27936449 6.25E-52 transposed
Cla03g01631 Cla-Chr3:32203447 Cla02g01361 Cla-Chr2:27936449 5.56E-32 transposed
Cla06g01497 Cla-Chr6:28511397 Cla02g01361 Cla-Chr2:27936449 4.19E-17 transposed
Cla07g00885 Cla-Chr7:24476703 Cla02g01361 Cla-Chr2:27936449 2.50E-50 transposed
Cla09g00572 Cla-Chr9:5299531 Cla02g01361 Cla-Chr2:27936449 1.34E-38 transposed
Cla09g02144 Cla-Chr9:39051807 Cla02g01361 Cla-Chr2:27936449 1.93E-117 transposed
Cla10g00404 Cla-Chr10:5486885 Cla02g01361 Cla-Chr2:27936449 1.72E-48 transposed
Cla10g00422 Cla-Chr10:5674336 Cla02g01361 Cla-Chr2:27936449 7.70E-39 transposed
Cla10g01956 Cla-Chr10:35391106 Cla02g01361 Cla-Chr2:27936449 9.77E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g332 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01361 Cam02g1439 Cec02g1460 Cco02g1497 Clacu02g1419 Cmu02g1376 Cre02g1703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00422 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.5e-49 190.7
Cla02g00899 CCT,ECH 74 185 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.5e-38 154.5
Cla10g00422 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.6e-51 198.4
Cla07g00885 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.2e-37 152.9
Cla02g00899 CCT,ECH 69 196 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cla10g00404 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.1 4.5e-50 194.5
Cla07g00885 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 6.1e-47 184.1
Cla02g01361 . 860 965 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.4 2.4e-43 172.2
Cla09g00572 . 175 270 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 2.0e-37 152.5
Cla02g01361 . 847 966 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 1.2e-49 193.0
Cla02g00899 CCT,ECH 69 181 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.5e-42 169.5
Cla10g00404 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 3.6e-41 164.9
Cla07g00885 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.6e-41 164.9
Cla09g00572 . 171 266 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.9e-38 155.2
Cla09g00572 . 173 270 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.1e-43 173.3
Cla10g00404 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 6.1e-39 157.5
Cla02g00899 CCT,ECH 86 185 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.1e-39 157.5
Cla07g00885 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.1e-38 154.5
Cla02g01361 . 853 994 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.9 4.5e-56 214.5
Cla10g01956 . 132 262 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.6 1.2e-48 189.9
Cla02g00899 CCT,ECH 74 184 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.4e-44 176.4
Cla07g00885 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.1e-41 164.9
Cla10g00404 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.6 2.7e-40 162.2
Cla09g00572 . 174 276 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 8.0e-37 150.6
Cla07g00885 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.2e-44 176.0
Cla02g00899 CCT,ECH 90 191 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.8e-44 175.3
Cla10g00404 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 8.7e-41 164.1
Cla02g01361 . 873 973 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.3e-39 160.2
Cla09g00572 . 175 275 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.3 4.8e-39 158.3
Cla02g00899 CCT,ECH 69 200 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.4e-52 201.4
Cla10g00404 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 2.0e-49 192.6
Cla07g00885 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.8e-45 177.2
Cla02g01361 . 873 985 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 2.2e-43 172.6
Cla09g00572 . 175 271 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cla02g01361 . 858 994 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.6 4.6e-56 214.5
Cla10g01956 . 132 261 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.7 1.9e-46 182.6
Cla02g00899 CCT,ECH 74 193 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.8e-45 178.7
Cla10g00404 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.5 5.5e-41 164.5
Cla07g00885 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 7.1e-41 164.1
Cla09g00572 . 174 276 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006362 1 6 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60666 PF01063 Aminotran_4 3.10E-14 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01361 Cla_Chr02 FPKM 18.408298 22.250544 11.526441 10.915034 14.12625 13.111494 14.707784 11.612151 9.719579 10.398546