Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01367 ATGGCTTACGTGGCCAAATGTAGTAATTCTCCTCCAACTCCCATCACTGTTCCTAACCCCTTATCTTTCTCTCCAATGTCTTCTTCCTCCACCGCCACCAATTTTGCTTCCCCACCCACTTCTCAGCCCTCCTCTCCTCCTCCGCCTGCCGTCGTCCTCAGCCCCTGCGCCGCCTGTAAAATCCTCCGCCGCCGCTGCGTCGAGAAATGTGTTTTGGCTCCATATTTCCCTCCCACTGAGCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGTGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTACGAGATCCAGTTTATGGTAGTGCGGGTGCGATTTGTCAGCTGCAAAAGCAAGTGAGTGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCTAACATGCAGCAACAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCAGAACCCGTTTGGCCGCCGCAGCTCATTGACACTGCATGTTTCCTCGACGATGCCACCCTTAGCTCGCCGTGGGAGCCACTTTGGACATGA 621 51.69 MAYVAKCSNSPPTPITVPNPLSFSPMSSSSTATNFASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLIDTACFLDDATLSSPWEPLWT 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28053777 28055048 + ClCG02G013910.1 Cla02g01367 267493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01367 206 Pfam Lateral organ boundaries (LOB) domain 55 152 IPR004883 -
Cla02g01367 206 Coils Coil 134 168 - -
Cla02g01367 206 MobiDBLite consensus disorder prediction 28 49 - -
Cla02g01367 206 ProSiteProfiles LOB domain profile. 54 155 IPR004883 -
Cla02g01367 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 37 188 - -
Cla02g01367 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 188 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g01367 Cla03g00228 CCT
Cla02g01367 Cla03g00228 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01367 Cla-Chr2:28053777 Cla03g00230 Cla-Chr3:2765872 1.70E-74 dispersed
Cla02g01367 Cla-Chr2:28053777 Cla02g02039 Cla-Chr2:35442150 2.21E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60667 PF03195 LOB 1.80E-40 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01367 - - bhj:120081845 348.977