Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g01367 | ATGGCTTACGTGGCCAAATGTAGTAATTCTCCTCCAACTCCCATCACTGTTCCTAACCCCTTATCTTTCTCTCCAATGTCTTCTTCCTCCACCGCCACCAATTTTGCTTCCCCACCCACTTCTCAGCCCTCCTCTCCTCCTCCGCCTGCCGTCGTCCTCAGCCCCTGCGCCGCCTGTAAAATCCTCCGCCGCCGCTGCGTCGAGAAATGTGTTTTGGCTCCATATTTCCCTCCCACTGAGCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGTGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTACGAGATCCAGTTTATGGTAGTGCGGGTGCGATTTGTCAGCTGCAAAAGCAAGTGAGTGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCTAACATGCAGCAACAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCAGAACCCGTTTGGCCGCCGCAGCTCATTGACACTGCATGTTTCCTCGACGATGCCACCCTTAGCTCGCCGTGGGAGCCACTTTGGACATGA | 621 | 51.69 | MAYVAKCSNSPPTPITVPNPLSFSPMSSSSTATNFASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLIDTACFLDDATLSSPWEPLWT | 206 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 28053777 | 28055048 | + | ClCG02G013910.1 | Cla02g01367 | 267493 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g01367 | 206 | Pfam | Lateral organ boundaries (LOB) domain | 55 | 152 | IPR004883 | - | |
Cla02g01367 | 206 | Coils | Coil | 134 | 168 | - | - | |
Cla02g01367 | 206 | MobiDBLite | consensus disorder prediction | 28 | 49 | - | - | |
Cla02g01367 | 206 | ProSiteProfiles | LOB domain profile. | 54 | 155 | IPR004883 | - | |
Cla02g01367 | 206 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1-LIKE | 37 | 188 | - | - | |
Cla02g01367 | 206 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 37 | 188 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla02g01367 | Cla03g00228 | CCT | |
Cla02g01367 | Cla03g00228 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01367 | Cla-Chr2:28053777 | Cla03g00230 | Cla-Chr3:2765872 | 1.70E-74 | dispersed | |
Cla02g01367 | Cla-Chr2:28053777 | Cla02g02039 | Cla-Chr2:35442150 | 2.21E-77 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60667 | PF03195 | LOB | 1.80E-40 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g01367 | - | - | bhj:120081845 | 348.977 |