Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01393 ATGTCAAATTCCGATCATACCACCAACGCCAATGGCGTCTCCAATGCCGCCGCCATCGAAACCCACAAGAATCAGCCCTCTTCTAACGGAGCCCTCGTCGTCAAAAAACCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGCCGTGGCCGCCGCATCCGTATGCCCATCATCTGCGCCGCCAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCTTCCATTATTGCCGCTACTGGTACTGGTACCACCCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCTCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCATTCTCGGCAAGCGCGTTAGGTCTGATGATGACGGCAAAGACGATGGGTTAGGAGTGGGTCAAGCTGTTGGGTCCATAGTGGGTCCGACGGGGCCAGGTGGGTACTGGGCGATTCCTGCAAGACCTGATTACGGGCAGGTTTGGAGTTTTGCCGCCGCCGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTTCTCAGCAAGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAAGCATCGGCGGCGAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGAGGGGCAGCAGATTTCTTGAACTTCGAATCGGAGCTTTATTTTTTGGCCGGAATCGGCTTTATTTATTGCAGTGGTAGCGGCGCCATTGAAGACCATTCTGAAGCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCAATGGTCGCTGGCGTTTGA 897 54.29 MSNSDHTTNANGVSNAAAIETHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGAADFLNFESELYFLAGIGFIYCSGSGAIEDHSEASSSSSSSSPSSMVAGV 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28388336 28389691 + ClCG02G014110.2 Cla02g01393 267519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01393 298 MobiDBLite consensus disorder prediction 20 51 - -
Cla02g01393 298 MobiDBLite consensus disorder prediction 36 51 - -
Cla02g01393 298 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 248 - -
Cla02g01393 298 ProSiteProfiles TCP domain profile. 39 93 IPR017887 -
Cla02g01393 298 Pfam TCP family transcription factor 39 125 IPR017887 -
Cla02g01393 298 MobiDBLite consensus disorder prediction 112 137 - -
Cla02g01393 298 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 248 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01393 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101206050 423.705
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01393 Cla-Chr2:28388336 Cla11g01311 Cla-Chr11:26626250 1.82E-39 dispersed
Cla02g02079 Cla-Chr2:35882835 Cla02g01393 Cla-Chr2:28388336 7.52E-28 dispersed
Cla01g00808 Cla-Chr1:9508678 Cla02g01393 Cla-Chr2:28388336 4.21E-100 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00808 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.4e-68 255.0
Cla02g01393 . 37 247 TCP Transcription Factor Family AT5G23280 59.9 5.9e-57 218.0
Cla06g00015 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.5e-66 250.4
Cla05g02451 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.9e-41 165.2
Cla04g01209 CCT,ECH 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.7e-39 161.0
Cla11g01311 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cla11g01311 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.5e-36 150.6
Cla05g01434 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.2e-60 229.2
Cla01g00808 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 9.0e-63 237.3
Cla02g01393 . 9 247 TCP Transcription Factor Family AT5G08330 55.8 8.4e-61 230.7
Cla11g01311 . 147 384 TCP Transcription Factor Family AT1G35560 50.4 1.5e-42 170.6
Cla07g01574 . 68 193 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60669 PF03634 TCP 4.80E-33 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01393 Cla_Chr02 FPKM 0.0 0.0 0.0 0.0 0.557267 0.350593 0.519487 0.0 0.0 0.0