Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01393 ATGTCAAATTCCGATCATACCACCAACGCCAATGGCGTCTCCAATGCCGCCGCCATCGAAACCCACAAGAATCAGCCCTCTTCTAACGGAGCCCTCGTCGTCAAAAAACCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGCCGTGGCCGCCGCATCCGTATGCCCATCATCTGCGCCGCCAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTTCGCCAGGCTGAGCCTTCCATTATTGCCGCTACTGGTACTGGTACCACCCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCTCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCATTCTCGGCAAGCGCGTTAGGTCTGATGATGACGGCAAAGACGATGGGTTAGGAGTGGGTCAAGCTGTTGGGTCCATAGTGGGTCCGACGGGGCCAGGTGGGTACTGGGCGATTCCTGCAAGACCTGATTACGGGCAGGTTTGGAGTTTTGCCGCCGCCGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTTCTCAGCAAGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAAGCATCGGCGGCGAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGAGGGGCAGCAGATTTCTTGAACTTCGAATCGGAGCTTTATTTTTTGGCCGGAATCGGCTTTATTTATTGCAGTGGTAGCGGCGCCATTGAAGACCATTCTGAAGCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCAATGGTCGCTGGCGTTTGA 897 54.29 MSNSDHTTNANGVSNAAAIETHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGAADFLNFESELYFLAGIGFIYCSGSGAIEDHSEASSSSSSSSPSSMVAGV 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28388336 28389691 + ClCG02G014110.2 Cla02g01393 267519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01393 298 MobiDBLite consensus disorder prediction 20 51 - -
Cla02g01393 298 MobiDBLite consensus disorder prediction 36 51 - -
Cla02g01393 298 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 248 - -
Cla02g01393 298 ProSiteProfiles TCP domain profile. 39 93 IPR017887 -
Cla02g01393 298 Pfam TCP family transcription factor 39 125 IPR017887 -
Cla02g01393 298 MobiDBLite consensus disorder prediction 112 137 - -
Cla02g01393 298 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 248 IPR005333 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01393 Cla-Chr2:28388336 Cla11g01311 Cla-Chr11:26626250 1.82E-39 dispersed
Cla02g02079 Cla-Chr2:35882835 Cla02g01393 Cla-Chr2:28388336 7.52E-28 dispersed
Cla01g00808 Cla-Chr1:9508678 Cla02g01393 Cla-Chr2:28388336 4.21E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60669 PF03634 TCP 4.80E-33 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01393 K16221 - csv:101206050 423.705