Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01395 ATGTTTCTGGCTATGGCTTCTAGTTCTCGGTACTCGATCTTGCCTCCAATCTGCTCGGAGCTGCTGTCTTTTCATTTCTTAAAGAGGAATATGTCTCGGAAATCCCAGGTGATGGTTTCATTGCAACCCACCAAATCCATGCCAGTTAATTCTCGGTTCATGATTCCACAAGCTGCTGAAACTTTGGAAGAGCCTTATAATCGGAATGCGAAAACCATGGAAGCTAATTCGATAGTTGACAGTGAAAATGGTGCTGCTGGAGATGATGCTGTCAATGGACTCCAATGCAGTATGAACAATATTGATGAGCTGAATGAGGACTCACCATACAATTACAATATTACAACAGTGGAAGAAAGACCCACCATGGATGATGGAGAAGATGGTTTTATGCCTTTACCTTCACCTTCAATGTCGGCTTCACATAGCGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTCCAAATGGGAATTGGGATCTTGTCAAGATACTATCGACGACAGGAACAGAGTCAGTAGTTTCACTGACTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAGTTTGATTCCTGCAAATCCGGATATTCTTGATGGTGTTGATGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTATTATATGATCTTGAGTACAGATATAATCAAGATATTATATATACAAAAGCAGGACCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGATTTGTATGGAAACGATTACATTGATGCATACAAGCGCAAAACAGTTGATAGCCCGCACGTATATGCCATTACCGATACAGCCATAAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTATAATAAGCGGTGAAAGTGGAGCTGGGAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCCGCTCTTGGTGGTGGAAGTGGAATAGAATATGAGATACTAAAGACCAATCCTATCTTAGAAGCTTTTGGAAATGCAAAAACATTGAGAAATGATAACTCAAGCCGTTTTGGAAAGTTGATAGAAATCCATTTTAGTGAAACTGGGAAAATATCTGGTGCAAATATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTTGTCCAATGCACGGAGGGAGAGAGGTCATACCACATCTTTTATCAACTATGTAGTGGGGCTTCGCCTACACTTAAAGAGAAGCTAAACTTGAGAAGAGCGGAAGAGTACAAATATCTCTCCCAGAGCAGTTGTTTTTCAATAAGTAGAGTAAATGATGCCGAGGAGTTTCGTGTGGTCATGGAAGCACTAGATGTCGTCCATATCAGCAAAGAAGATCAGCACAGTGTATTTGCAATGCTTGCTGCTGTTCTATGGCTGGGAAATGTTTCCTTTAGTGTTATAGACAATGAGAATCATGTGGAGGCTGTGGAAGATGAAGGTTTACAGACTGTTGCTAAACTGATTGAGTGTGAGATTGAGGAGCTTAAACTAGCTTTATCAACTAGAAAAATGAGAGTTGGGAATGACAGCATTGTCCAAAAGCTTACTTTATCTCAGGCAAGAAACTTGTTCAGGAAAACCTCTTACTTTATATTGTGTATAAGCGAGAAACTAATTCCCATCAACAAACTACATGCAATTGACACAAGAGATGCATTGGCAAAGTCAATTTACGCTTGTTTGTTTGAGTGGCTGGTCGAACAAATTAACAAATCTCTTTCTGTAGGCAAACGACGCACTGGCAGATCCATCAGCATTCTTGATATTTATGGCTTTGAATCGTTTGATAGAAATAGTTTTGAACAGTTCTGTATTAACTATGCGAACGAGAGACTACAGCAGCATTTCAATCGTCATTTATTTAAGCTAGAGCAGGAGGAATATATTCAAGATGGCATCGATTGGGCAAAAGTTGATTTTGACGACAACCAAGATTGTCTCAGTCTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGATGAGGAGTCTACTTTTCCAAACGGTACAGATCTGACCTTCGCGAACAAGCTTAAGCAGCATTTGGGTCCTAATTCTTCTTTTAGAGGAGAACGAGGGAAAGGCTTCACTGTCTATCATTATGCAGGAGAGGTCACTTACGACACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCGATTCAACTCCTATCCTCATGCTCATGCCATCTCCCTCAGATTTTTGCATCCAACATGCTAACTCAATCGGAAAAGTCCATAGGTGGCACTTTACACAAGTCTGGTGGTGCAGAATCCCAAAAACTAAGTGTTGCAAGAAAGTTTAAGGGTCAATTATTCCAATTGATGCTCCGTCTTGAAAATACAACACCCCATTTTATCCGTTGCATCAAGCCCAACAACGTTCAGTCTCCCAGATTGTATGAGCAAGGACTTGTATTACAACAGTTAAGATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGTTTTCCTACCCGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTCCTTCTACAAGAAAACATTGCATCACAGGATCCCCTAAGTGTCTCTGTCGCAATTCTTCATCAATTCAATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGAGTGCTTGAAGATACAAGAAACCGCACCCTCCATGGGATTCTCTCTGTTCAAAGCTGTTATAGAGGGCATCTGGCTCGACGCCACCTCAAAGAGCTAAAGAGAGGGATTTCCGTGCTTCAGTCATTTGCACGTGGGGAGAAAGCAAGAAAAGAATATGCAATCTTGATGCAAAGACATAGGGCTGCTATTTCTATTCAAAAGTGTGTGAAAGCCAGAATTGCTAGTAAACGTTTGAAGAAAGTCTGTGATGCATCACTTACGATACAATCGGTTATCCGTGGCTGGTTGGTCAGGAGATGCTCAGGGGATATAGGTTTAATGAAACCTGGTGGCCTGACGGCAAATGGGTCAGGTGAGGTGCTTGTTAAGTCATCATTCCTTGCAGAATTACAACGCCGTGTCCTGAAGGCCGAGGCTGCTTTGCGAGAGAAAGAAGAGGAAAACGACATCCTCCATCAACGTCTCCAACAGTATGAGAACCGTTGGTCAGAGTATGAGCTGAAAATGAAGTCAATGGAAGAGGTGTGGCAGAGACAAATGAGATCCCTGCAGTCTAGCCTCTCCATTGCAAAGAAAAGCCTAGCAGTTGATGATTCAGAAAGAAATTCTGATGCATCGGTGAACGCAAGCGATGACAGAGGATACAGTTGGGAAGTGGGTAGCAACAACACAGCTAATGAAAGCAATGGAGTAAGACCAATGAATGCAGGTCTCAGCGTCATTAGCCGATTGGCTGAAGAATTCGAACAAAGAAGTCAAGTGTTTGGCGATGATGCAAAGTTCTTGGTAGAGGTAAAATCCGGTCAAGTTGAGGCAAGTCTTGACCCAGATAGGGAACTTAGAAGGTTGAAGCAAATGTTTGAAGCATGGAAGAAAGATTACGGGGGAAGGCTGCGCGAAACGAAAGTGATTTTGAATAAGCTTGGAAATGAAGGTGCCATGGATAGGGTGAAAAAGAAATGGTGGGGAAGAAGGAACAGCACAAGCAACGCTATAGTTGCAAAGGGGAGGAACTGCTGGAAGAGTTCTGTTCTAATTTTTCCATTACAATTTTTTTGA 3759 41.5 MFLAMASSSRYSILPPICSELLSFHFLKRNMSRKSQVMVSLQPTKSMPVNSRFMIPQAAETLEEPYNRNAKTMEANSIVDSENGAAGDDAVNGLQCSMNNIDELNEDSPYNYNITTVEERPTMDDGEDGFMPLPSPSMSASHSERRWGDTSSYTPRKILQSWFKLPNGNWDLVKILSTTGTESVVSLTDGKVLKVKAESLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIDAYKRKTVDSPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCTEGERSYHIFYQLCSGASPTLKEKLNLRRAEEYKYLSQSSCFSISRVNDAEEFRVVMEALDVVHISKEDQHSVFAMLAAVLWLGNVSFSVIDNENHVEAVEDEGLQTVAKLIECEIEELKLALSTRKMRVGNDSIVQKLTLSQARNLFRKTSYFILCISEKLIPINKLHAIDTRDALAKSIYACLFEWLVEQINKSLSVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLGPNSSFRGERGKGFTVYHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEKSIGGTLHKSGGAESQKLSVARKFKGQLFQLMLRLENTTPHFIRCIKPNNVQSPRLYEQGLVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQENIASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILSVQSCYRGHLARRHLKELKRGISVLQSFARGEKARKEYAILMQRHRAAISIQKCVKARIASKRLKKVCDASLTIQSVIRGWLVRRCSGDIGLMKPGGLTANGSGEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGYSWEVGSNNTANESNGVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGGRLRETKVILNKLGNEGAMDRVKKKWWGRRNSTSNAIVAKGRNCWKSSVLIFPLQFF 1252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28425973 28443684 + ClCG02G014140.2 Cla02g01395 267521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01395 1252 PRINTS Myosin heavy chain signature 239 258 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla02g01395 1252 PRINTS Myosin heavy chain signature 646 674 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla02g01395 1252 PRINTS Myosin heavy chain signature 293 318 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla02g01395 1252 PRINTS Myosin heavy chain signature 335 362 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla02g01395 1252 PRINTS Myosin heavy chain signature 593 621 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla02g01395 1252 SMART MYSc_2a 203 908 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla02g01395 1252 SMART iq_5 908 930 IPR000048 GO:0005515
Cla02g01395 1252 SMART iq_5 980 1002 IPR000048 GO:0005515
Cla02g01395 1252 SMART iq_5 957 979 IPR000048 GO:0005515
Cla02g01395 1252 SMART iq_5 931 953 IPR000048 GO:0005515
Cla02g01395 1252 Gene3D - 391 447 - -
Cla02g01395 1252 ProSiteProfiles IQ motif profile. 932 961 IPR000048 GO:0005515
Cla02g01395 1252 MobiDBLite consensus disorder prediction 1098 1131 - -
Cla02g01395 1252 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 42 531 - -
Cla02g01395 1252 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 554 1227 - -
Cla02g01395 1252 Coils Coil 1027 1075 - -
Cla02g01395 1252 Gene3D Myosin VI head, motor domain, U50 subdomain 448 582 - -
Cla02g01395 1252 Gene3D - 841 908 - -
Cla02g01395 1252 Gene3D - 960 1001 - -
Cla02g01395 1252 Gene3D - 913 959 - -
Cla02g01395 1252 Pfam Myosin head (motor domain) 211 895 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla02g01395 1252 ProSiteProfiles IQ motif profile. 911 937 IPR000048 GO:0005515
Cla02g01395 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 955 IPR027417 -
Cla02g01395 1252 Gene3D - 605 797 - -
Cla02g01395 1252 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 156 205 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cla02g01395 1252 CDD MYSc_Myo8 223 895 IPR036022 -
Cla02g01395 1252 ProSiteProfiles Myosin motor domain profile. 209 907 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla02g01395 1252 PANTHER MYOSIN 42 531 - -
Cla02g01395 1252 Gene3D Kinesin motor domain 208 840 IPR036961 -
Cla02g01395 1252 PANTHER MYOSIN 554 1227 - -
Cla02g01395 1252 MobiDBLite consensus disorder prediction 1115 1131 - -
Cla02g01395 1252 Pfam IQ calmodulin-binding motif 914 930 IPR000048 GO:0005515
Cla02g01395 1252 Pfam IQ calmodulin-binding motif 934 952 IPR000048 GO:0005515
Cla02g01395 1252 Pfam IQ calmodulin-binding motif 984 999 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01395 Cla-Chr2:28425973 Cla11g01804 Cla-Chr11:31704159 0 dispersed
Cla02g01395 Cla-Chr2:28425973 Cla05g00393 Cla-Chr5:3553666 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01395 - K10357 csv:101222101 2198.7