Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01429 ATGTTTGACTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGAGAAAAGTTTGTGAGGTTGGATGACTTGGACTCCAGATTGTCATCACCTTCTGATAGTGGAATGAGAAGATGTGGGTTTAATATAGATGGATTTAACCGTGCAGTCCATGGGAATGATAAGCCGTCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCTGAAGGACTTAAATCGATTGGCCGATCACTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAAATCTTCGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCAGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAGCTTGAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATCATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGAACAGCTTATATTGCACCATCATCTCGGGTGTTTGGAAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAGCGATACTTGCGGCGGTACTTCATCATTGACTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTGTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTTCCGTTGGCTTCAGAGTTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGCAATGATACATGTTGGCAGAAGTATTGTATTGCCCCTATTTGCAGGAAAGATTTCTTGTATTGTGGTAACCAAGACATGGAAGGTTATGCAACTTGGAACCAGACAGGTGTTGATGGCCTTAAGTCAAGTTGCGCACCTACTGATGGAAATGAACAGTTCGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGTATTGCCGCTTCCAAGAATTTTATCGCTAAATACTGTTACTGTCTGTGGTGGGGACTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATAGCATTAGCTGTACTTGGTCTCATTCTCTTTGCTCTTCTTATTGGCAATATGCAGACTTACCTTCAATCTCTAACTATAAGGCTTGAGGAAATGAGGGTGAAAAGGCGTGATTCAGAGCAGTGGATGCATCACCGATTGCTGCCGCAGGATCTTCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAAACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTCTACCTAAGGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCTTGTTTGTTTACGGAGTACACTTACATAGTGCGTGAGGGTGATCCAGTTGATGAGATGCTTTTCATTATCCGTGGTCGGCTTGAGAGTGTGACTACAGATGGCGGGCGGAGTGGATTTTTCAACCGTTCCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTTTGGATCCGAAATCTGGTTCAAATCTTCCATCTTCTACAAGGACGGTGAAGGCTATTACAGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTGAAATTTGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGATTCTACTCGCAGCAATGGAGGACCTGGGCTGCCTGCTTCATCCAAGCGGCATGGCGCCGATATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCTGAGGGATCTCATACTGCCACAAGTGGAGGCTCTTATAGTATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGGGGGGTTCAGCGATACCGGAATGCAAAGAGCGCTCAGGAATTAATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGCGCTGATGATGCAGATTGA 2205 43.85 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAISVDPLFFYVPVINQSLNCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLVIVFLQYIPRFLRAFPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCIAPICRKDFLYCGNQDMEGYATWNQTGVDGLKSSCAPTDGNEQFDFGIFQQALSSGIAASKNFIAKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEVAAEESEGSHTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28817885 28831182 + ClCG02G014470.2 Cla02g01429 267555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01429 734 SUPERFAMILY Voltage-gated potassium channels 101 427 - -
Cla02g01429 734 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Cla02g01429 734 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla02g01429 734 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla02g01429 734 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla02g01429 734 PRINTS EAG/ELK/ERG potassium channel family signature 400 411 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla02g01429 734 PRINTS EAG/ELK/ERG potassium channel family signature 418 427 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla02g01429 734 PRINTS EAG/ELK/ERG potassium channel family signature 468 475 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla02g01429 734 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 731 - -
Cla02g01429 734 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Cla02g01429 734 SMART cnmp_10 505 636 IPR000595 -
Cla02g01429 734 Pfam Ion transport protein 109 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla02g01429 734 Gene3D - 110 430 - -
Cla02g01429 734 ProSiteProfiles cAMP/cGMP binding motif profile. 505 589 IPR000595 -
Cla02g01429 734 CDD CAP_ED 505 636 IPR000595 -
Cla02g01429 734 Pfam Cyclic nucleotide-binding domain 530 615 IPR000595 -
Cla02g01429 734 Gene3D Helix hairpin bin 433 496 - -
Cla02g01429 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 731 - -
Cla02g01429 734 Gene3D Jelly Rolls 503 623 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01429 Cla-Chr2:28817885 Cla10g01398 Cla-Chr10:29072186 0 dispersed
Cla05g00954 Cla-Chr5:9512577 Cla02g01429 Cla-Chr2:28817885 7.72E-109 dispersed
Cla05g00956 Cla-Chr5:9537739 Cla02g01429 Cla-Chr2:28817885 1.41E-116 dispersed
Cla02g01429 Cla-Chr2:28817885 Cla01g00052 Cla-Chr1:416897 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01429 K05391 - csv:101219180 1377.84