Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01497 ATGGCGTCGAGGAACCGGACTTTGCTTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCGTCGCCTGTTTCTGCATCGCCATCGACTAGCTCTGCCGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGAATCCCAATCGGTCGTACGCTCCATTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTTGGTCTACCTCCGGCTTGGGTGGATGTATCTGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAGGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAGGATCAACGATTAATTGAATCTCTCACACAAGACATAACCAATTTAATCAAGAAATCAGAGAAAGGACTCAAGAGACTCTCTGTAGCCGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGATCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACATATTTAAAGCGGCTACGGCAGCAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAATAGATCGAGAATGGAGGACGATGATTTAGAACATATGGTGTTTAATGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCATTCACCGCCGAAAGAGAGAGAGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCTGTACTTGTCATAGACCAGGGTACCATTATCGATAGAATAGATTACAATATTCAAAATGTTGCAACGACCGTCGATGAGGGCCTTAAGCAACTGCAAAAGGCAGAGAGAACACAGAAACAAGGAGGGATGGTGATGTGCGCATCCGTGCTCATTATCATGTGCTTTGTCATGTTGGTTCTTCTGATCCTCAAAACCATACTATTTTAA 990 44.55 MASRNRTLLFRKYRDALRSVRVPTSSSPVSASPSTSSAAGGPVIELVSSSLLNPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTILF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29482666 29486894 - ClCG02G015160.1 Cla02g01497 267623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01497 329 SMART tSNARE_6 228 295 IPR000727 -
Cla02g01497 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Cla02g01497 329 Pfam SNARE domain 269 321 IPR000727 -
Cla02g01497 329 SMART SynN_4 73 188 IPR006011 GO:0016020
Cla02g01497 329 PANTHER SYNTAXIN 1 324 IPR045242 -
Cla02g01497 329 CDD SNARE_syntaxin16 237 294 - -
Cla02g01497 329 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020|GO:0016192
Cla02g01497 329 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cla02g01497 329 Gene3D - 79 287 - -
Cla02g01497 329 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01497 Cla-Chr2:29482666 Cla09g00505 Cla-Chr9:4769104 1.41E-132 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01497 K08489 - csv:101207998 580.096