Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g01497 | ATGGCGTCGAGGAACCGGACTTTGCTTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCGTCGCCTGTTTCTGCATCGCCATCGACTAGCTCTGCCGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGAATCCCAATCGGTCGTACGCTCCATTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTTGGTCTACCTCCGGCTTGGGTGGATGTATCTGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAGGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAGGATCAACGATTAATTGAATCTCTCACACAAGACATAACCAATTTAATCAAGAAATCAGAGAAAGGACTCAAGAGACTCTCTGTAGCCGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGATCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACATATTTAAAGCGGCTACGGCAGCAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAATAGATCGAGAATGGAGGACGATGATTTAGAACATATGGTGTTTAATGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCATTCACCGCCGAAAGAGAGAGAGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCTGTACTTGTCATAGACCAGGGTACCATTATCGATAGAATAGATTACAATATTCAAAATGTTGCAACGACCGTCGATGAGGGCCTTAAGCAACTGCAAAAGGCAGAGAGAACACAGAAACAAGGAGGGATGGTGATGTGCGCATCCGTGCTCATTATCATGTGCTTTGTCATGTTGGTTCTTCTGATCCTCAAAACCATACTATTTTAA | 990 | 44.55 | MASRNRTLLFRKYRDALRSVRVPTSSSPVSASPSTSSAAGGPVIELVSSSLLNPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTILF | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 29482666 | 29486894 | - | ClCG02G015160.1 | Cla02g01497 | 267623 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g01497 | 329 | SMART | tSNARE_6 | 228 | 295 | IPR000727 | - | |
Cla02g01497 | 329 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 233 | 295 | IPR000727 | - | |
Cla02g01497 | 329 | Pfam | SNARE domain | 269 | 321 | IPR000727 | - | |
Cla02g01497 | 329 | SMART | SynN_4 | 73 | 188 | IPR006011 | GO:0016020 | |
Cla02g01497 | 329 | PANTHER | SYNTAXIN | 1 | 324 | IPR045242 | - | |
Cla02g01497 | 329 | CDD | SNARE_syntaxin16 | 237 | 294 | - | - | |
Cla02g01497 | 329 | SUPERFAMILY | t-snare proteins | 78 | 288 | IPR010989 | GO:0016020|GO:0016192 | |
Cla02g01497 | 329 | ProSitePatterns | Syntaxin / epimorphin family signature. | 239 | 278 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cla02g01497 | 329 | Gene3D | - | 79 | 287 | - | - | |
Cla02g01497 | 329 | PANTHER | TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 324 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01497 | Cla-Chr2:29482666 | Cla09g00505 | Cla-Chr9:4769104 | 1.41E-132 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g01497 | K08489 | - | csv:101207998 | 580.096 |