Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01501 ATGGGGAAATTTGGGATCAGTGGGGTTGTGAGAATTGGAATTGCTAAGCTGATGGGGCATTTCTCCACCATGTTTAATGGGCTGGCAAGGTCATTTTCCTTCAAGAAAGGTAGAAATTCTGGGAGTCTAGGCAACGAGGGAGGGCGAGAAGCTGCAAAAGCCATGATAAAGGATGCAAAAAGGAAAGACTCGATATTATGCACCTCCGGTGTACTCAATGCAGAAGGTTCGGATACTTTTGCTTCAGTGTTCTCGAAGAAAGGCGAAAAAGGAGTAAACCAAGATTGCTGCATTGTATGGGAGGAATTTGGATGCCAAGAAGACATGATATTTTGTGGGATTTTCGATGGGCACGGACCATGGGGTCACTTTGTTGCAAAGACGGTAAGAGAATCATTGCCGCCTTCTTTGCTGTGCCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGACCCAGAATTGGATTCAGAAAAGAAGCATCAGCGATTTGATATATGGAAGCATTCTTATTTAAGAACTTGTGCTGCCATTGATCACGAACTCGAGCAGCACCGTAAAATCGATACATTTTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGCGAACTGGTCGTTTTGGCCAACGTAGGTGACTCCCGAGCGGTTTTAGCTACTACTTCAGATGATGGAAGTATAGTACCGGTTCAGCTCACCGTTGATTTCAAACCAAACCTACCTCAGGAGGCTGAGCGGATAATTCAATGCAATGGGAGGGTATTTTGTTTAAGTGACGAGCCGGGAGTTCATAGGGTCTGGCTTCCCAACGAGGAAACCCCGGGATTGGCGATGTCGAGAGCCTTCGGTGATTATTGTATTAAAGAATTCGGACTCATTTCTGTGCCAGAAGTAACACATAGAAGTATAACCAGCAGAGACCAATTCATTATATTGGCCACTGATGGGGTATGGGATGTTGTCACCAACCAAGAAGCAGTGGAGATTGTATCGTCAACACCAAATCGAGCGAAATCGTCGAAACGTCTGGTCGAGTGTGCTGTTCGGGCATGGAAACGGAAGAGACGAGGCATTGCAATGGATGATATATCAGCTATCTGTCTCTTCTTCCACTCCTCATCAGAGCAAGATGATCACCTTGTATCCACAATATAG 1155 45.54 MGKFGISGVVRIGIAKLMGHFSTMFNGLARSFSFKKGRNSGSLGNEGGREAAKAMIKDAKRKDSILCTSGVLNAEGSDTFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKTVRESLPPSLLCHWQQGLAQAFLDPELDSEKKHQRFDIWKHSYLRTCAAIDHELEQHRKIDTFYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSIVPVQLTVDFKPNLPQEAERIIQCNGRVFCLSDEPGVHRVWLPNEETPGLAMSRAFGDYCIKEFGLISVPEVTHRSITSRDQFIILATDGVWDVVTNQEAVEIVSSTPNRAKSSKRLVECAVRAWKRKRRGIAMDDISAICLFFHSSSEQDDHLVSTI 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29542599 29545352 - ClCG02G015200.2 Cla02g01501 267627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01501 384 ProSiteProfiles PPM-type phosphatase domain profile. 80 370 IPR001932 -
Cla02g01501 384 CDD PP2Cc 80 370 IPR001932 -
Cla02g01501 384 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 18 379 - -
Cla02g01501 384 Gene3D - 67 373 IPR036457 -
Cla02g01501 384 SMART PP2C_4 69 368 IPR001932 -
Cla02g01501 384 Pfam Protein phosphatase 2C 104 343 IPR001932 -
Cla02g01501 384 PANTHER ALPHABET, ISOFORM E-RELATED 18 379 - -
Cla02g01501 384 SUPERFAMILY PP2C-like 76 371 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01501 Cla-Chr2:29542599 Cla11g00927 Cla-Chr11:16035128 2.43E-117 dispersed
Cla02g01501 Cla-Chr2:29542599 Cla03g01683 Cla-Chr3:32699425 3.12E-180 wgd
Cla02g01501 Cla-Chr2:29542599 Cla06g00457 Cla-Chr6:5563819 6.72E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01501 - - csv:101208725 719.153