Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla02g01570 | ATGGCATTAGAGGCTGTGGTTTTTTCTCAAGATCCATTAAATTACAATGGAAGCAAAGATCTTTACTCTTTGTTTGGAGGAGGAATCTGGGCAAATGGAAGCTTTGAATATCCTGAAATCCCTCATGATTTTCTCGAGAACCAAACAGAAAATTTCCCATTTGAAGATTGGAACTCAGCCTCCTCTGTTTTCGTTCCTAATCCTTCCCCCGAAGCTGCCGTTTCCAGAAATGGGTATCTCTTCAACGACCCAAATCCGCCATTAGAGGCTGAATCAACAACTCCAAATTCAATTCGACCCAGAAAACGAAGACCCAAATCCCGCAAGAACAAAGAGGAAATCGAAAATCAGAGAATGACTCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAGTATCTCTCTGTTCTTCGATCTTTAATGCCAGAGTCTTATGTCCAAAGGGGAGATCAAGCTTCGATTATTGGGGGTGCAATTAATTTTGTGAAGGAGCTGGAACAGCAAGTTCAAGTTCTATCCACAATGGAAACTAAGGGGAAGAATAATTCAGAAGGGTGTTGTGATTCAAATTCAAAAATCCCTTTCACAGAGTTCTTCAGCTTCCCTCAGTTCAAAGCAATGGAGGGTTGTTGTTCAGTGAGTGAAAATGAGAACCAATGCTCTTCCACCATTGCTGACATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATAAGGTCAAAGAGAAGGCCTAAACAAATCTTGAAAATTGTTGCTGGCTTGCATTCTCTTTCCCTCTCTGTTCTTCATCTCAATATCTCTACTATCAACCAAATTGCTCTTTACTGTCTCAGTGTCAAGGTTGAAGATGATTGCAAGCTGACTTCTGTTGATGAAATTGCTTCTGCTCTGCATCAGTTGCTTAGTAGAATAGAAGAAGATTCACTTATGAACTGA | 948 | 39.98 | MALEAVVFSQDPLNYNGSKDLYSLFGGGIWANGSFEYPEIPHDFLENQTENFPFEDWNSASSVFVPNPSPEAAVSRNGYLFNDPNPPLEAESTTPNSIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMETKGKNNSEGCCDSNSKIPFTEFFSFPQFKAMEGCCSVSENENQCSSTIADIEVTMVENHANLKIRSKRRPKQILKIVAGLHSLSLSVLHLNISTINQIALYCLSVKVEDDCKLTSVDEIASALHQLLSRIEEDSLMN | 315 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 30378559 | 30380154 | + | ClCG02G015980.1 | Cla02g01570 | 267696 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla02g01570 | 315 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 116 | 177 | IPR036638 | GO:0046983 | |
| Cla02g01570 | 315 | Gene3D | - | 107 | 195 | IPR036638 | GO:0046983 | |
| Cla02g01570 | 315 | PANTHER | MAX DIMERIZATION, MAD | 1 | 315 | - | - | |
| Cla02g01570 | 315 | Pfam | Helix-loop-helix DNA-binding domain | 117 | 168 | IPR011598 | GO:0046983 | |
| Cla02g01570 | 315 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 116 | 167 | IPR011598 | GO:0046983 | |
| Cla02g01570 | 315 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 1 | 315 | - | - | |
| Cla02g01570 | 315 | MobiDBLite | consensus disorder prediction | 78 | 114 | - | - | |
| Cla02g01570 | 315 | SMART | finulus | 122 | 173 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01570 | Cla-Chr2:30378559 | Cla10g00159 | Cla-Chr10:1703280 | 4.60E-14 | dispersed | |
| Cla05g00002 | Cla-Chr5:56108 | Cla02g01570 | Cla-Chr2:30378559 | 1.37E-53 | transposed | |
| Cla05g00351 | Cla-Chr5:3180812 | Cla02g01570 | Cla-Chr2:30378559 | 8.14E-50 | transposed | |
| Cla05g00577 | Cla-Chr5:5276215 | Cla02g01570 | Cla-Chr2:30378559 | 1.07E-36 | transposed | |
| Cla08g01134 | Cla-Chr8:24069718 | Cla02g01570 | Cla-Chr2:30378559 | 3.11E-87 | transposed | |
| Cla09g01111 | Cla-Chr9:12068621 | Cla02g01570 | Cla-Chr2:30378559 | 2.29E-62 | transposed | |
| Cla02g01570 | Cla-Chr2:30378559 | Cla03g01613 | Cla-Chr3:31978847 | 4.16E-80 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60677 | PF00010 | HLH | 7.70E-10 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla02g01570 | - | - | csv:101212782 | 541.191 |