Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01593 ATGTTGAGATTCCATGTGGGCGGGAAGGTGGTCGAGAGAGTTGACTTGTTGAGGAAGAAGCACTGGGCAGGGCGGTTCGATCTGTGGCCATTTGCCATTCTTTATGCGGCCTGGCTTGCCGTTGTTGTTCCTAGTATAGACTTTGGGGATGCTTTCATTGTTTTAGGTGGACTTGCGGCTCTTCATGTTCTGGTCTTGCTTTTCACTGCTTGGTCGGTTGATTTCAAATGTTTTGTCCAGTACAGTCAGGTTAATGATATTTACCGTGCTGATACATGCAAGATAGTTCCAGCAAAATTTTCGGGCTCAAAAGAAATTGTTTCACTTCATTTTCGTAAGCTTCTGGCAGGTTCTGCATCTGCACTTGACCTTGAGGAGATCTACTTTGATTTCAGAAAACAACGATTTATTTATTCAAAGGAGAAGGAGACATTCTGCAAGCTTCCTTACCCAACAAAAGAAACTTTTGGTTATTATCTAAAGAATACTGGCTATGGGTCCGAGCCTAAAGTTGTAGCTGCTGTTGAAAAATGGGGGCGCAATATATTCGAGTATCCACAACCTACGTTTCAGAAATTAATGAAGGAGCAGTGTATGGAACCATTTTTTGTGTTTCAGGTTTTTTGTGTGGGACTATGGTGTTTGGATGAGTATTGGTATTACAGCCTGTTTACTCTGTTTATGCTGTTCATGTTTGAGTCAACAATGGCAAAAAGTCGGTTAAAGACCTTAAGTGAGTTAAGACGTGTCAGAGTGGATACTCAGACCTTAATGGTGCACCGTTGTGGAAAGTGGGTGAAGCTACCTGGAACTGAGCTTTTGCCAGGAGATGTTGTCTCCATAGGGCGTGATTCTGGTCAGAGTGGTGAAGATAAATCCGTACCTGCTGATATGCTTATTTTGGCTGGAAGTACTATTGTTAATGAAGCCATTCTTACTGGGGAGTCTACACCACAATGGAAGGTTTCAATAACTGGGAGAGGAATTGAGGAGAAGTTATCAGCTAAGAGAGACAAAAGTCATGTGTTATTTGGTGGGACCAAAATACTCCAGCATACTCCGGATAAGACCTTTCCTCTTAGAACCCCTGATGGTGGCTGCCTAGCAGTTGTTTTGCGAACTGGATTTGAAACAAGTCAAGGGAAACTAATGCGCACAATTTTATTTTCTACAGAGAGGGTTACAGCTAACAGTTGGGAAAGTGGCCTATTTATTCTGTTCTTAGTTGTATTTGCAGTTATAGCTGCTGGTTACGTACTTGTAAAGGGGTTGGAAGATCCCACGAGAAGCAAGTACAAGCTTTTCCTTAGTTGCTCACTTATAATCACCTCTGTTATTCCTCCTGAACTACCAATGGAACTGTCAATAGCAGTTAATACATCGTTAATTGCTCTAGCACGCCGTGGAATATTTTGTACAGAGCCTTTCCGGATACCATTTGCTGGAAAGGTTGATATTTGTTGTTTCGATAAAACTGGAACATTGACATCAGATGACATGGAGTTTCGAGGAGTAGTTGGGTTGAGTGATAAGGAGGATTTGGAAACTGACATGACTAGTGTGTCTTTGCGTACAGTCGAAATTCTGGCTTCTTGTCATGCATTGGTGTTTGTGGACAACAAGTTGGTGGGGGATCCTCTTGAAAAGGCTGCTCTCAAGGGAGTTGATTGGATTTACAAATCTGATGAGAAAGCGATTCCCAGAAAGGGAAGTGGCCACGCTGTCCAGATTGTTCAGAGGCACCACTTTGCTTCACATTTGAAGAGAATGGCAGTTGTTGTGCGCCTTCAAGAGGAATTTTTTGCATTTGTGAAGGGTGCCCCCGAAACCATCCAGGAGAGGCTCACTGATATACCTTCATTTTATGTTGAGACATATAAGAAATATACACGACAAGGTTCCCGAGTCCTTGCTCTTGCTTATAAGTCACTTCCAGACATGACAGTTAGTGAAGCTAGAGGCCTGGATAGGGACACGGTAGAGAGTGACCTGACATTTGCTGGTTTTGCGGTGTTCAATTGTCCAATTAGAGCAGATTCGGCTACAGTATTATCTGAGCTTAAAGGGTCATCCCATGACTTGGTAATGATTACTGGTGACCAAGCTTTAACAGCGTGCCATGTTGCTAGCCAAGTTCATATTACATCAAAGCAGATTTTAATTCTCAATTCAATGAAGGGAACTGAGGAATATGAATGGCTTTCCCCAGATGAGTCACAGACAGTTCCCTACAGAGAGAAAGAGGTGGGAACTTTATCGGAGACATATGATCTTTGTATTGGAGGTGACTGCATCGCAATGCTACAACGCACCTCTACTGTGCTGGATGTTATTCCATACGTTAAGGTTTTTGCAAGAGTTGCTCCTGAGCAGAAAGAACTCATTTTGACAACTTTCAAAACAGTTGGAAGAATGACGTTAATGTGTGGGGATGGAACGAACGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAATTGCTCTCCTAAACGCAGTCCCTCCTCCTCAAAGTGGCAACTCTTCTTCAGAAGCATCAAAAGATGAGGCTGTACGGTCTGCAAAGTCAAAGAAATCTAAGCCTTCATCCGAATCATCAGGAAAAGCACTTGTAAGTGGAGAAGGTTCTTCAAAAAGCAAAGGTGGTGCAAAACTGGATTCTGCTGCTGAGCAAGCAAGTAACCGTCCACGGACACCTGCAGAGATGCAAAGACAGAAGCTAAAGAAACTTATGGATGAGTTAAATGAAGAGGGTGATGGGCGCTCTGCCCCTATTGTCAAGCTTGGAGATGCATCCATGGCATCACCATTCACCGCAAAGCATGCCTCTGTTGCTCCTACTACTGACATTATTCGCCAAGGCCGAAGTACTCTAGTGACAACTCTACAGATGTTCAAAATACTCGGTCTCAACTGCCTCGCTACTGCCTATGTACTGAGTGTTATGTATTTGGATGGTGTAAAGCTTGGCGATATTCAAGCCACTATCAGTGGAGTATTCACAGCAGCCTTTTTTCTCTTCATCTCACATGCGCGGCCCCTTCCAACACTCTCAGCTGAACGCCCCCATCCACACATCTTTTGCTCTTACGTGCTCCTTTCTCTGTTGGGCCAATTTGCAATCCACTTATGTTTCTTGATTTCTTCGGTTAAAGAAGCTGAAAAGCACATGCCTGATGAATGTATAGAGCCAGACTCAGATTTTCATCCCAACTTGGTTAACACGGTTTCATACATGGTAAGCATGATGCTTCAGGTGGCAACCTTTGCTGTAAACTACATGGGTCATCCCTTCAACCAGAGTGTATCCGAAAACAAGCCGTTCTTATACGCCCTCTTGGCTGCAGTTGGTTTTTTCACCGTTATTACCTCTGATTTGTTTAGAGATCTCAATGACTGGCTGAAACTTGTTCCATTGCCTGTGGGAATGAGGGATAAGCTTCTGGCTTGGGCACTTCTTATGTTCTTGTGCTGTTACTCTTGGGAAAGACTGTTGAGATTTATGTTCCCAGGTAAAATCCCAGCGTGGCGGAAGCGACAACGACTGGTGGCTGCTAATCTGGAGAAGAAGAAACAGGTCTGA 3579 43.73 MLRFHVGGKVVERVDLLRKKHWAGRFDLWPFAILYAAWLAVVVPSIDFGDAFIVLGGLAALHVLVLLFTAWSVDFKCFVQYSQVNDIYRADTCKIVPAKFSGSKEIVSLHFRKLLAGSASALDLEEIYFDFRKQRFIYSKEKETFCKLPYPTKETFGYYLKNTGYGSEPKVVAAVEKWGRNIFEYPQPTFQKLMKEQCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLSELRRVRVDTQTLMVHRCGKWVKLPGTELLPGDVVSIGRDSGQSGEDKSVPADMLILAGSTIVNEAILTGESTPQWKVSITGRGIEEKLSAKRDKSHVLFGGTKILQHTPDKTFPLRTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFAVIAAGYVLVKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFRGVVGLSDKEDLETDMTSVSLRTVEILASCHALVFVDNKLVGDPLEKAALKGVDWIYKSDEKAIPRKGSGHAVQIVQRHHFASHLKRMAVVVRLQEEFFAFVKGAPETIQERLTDIPSFYVETYKKYTRQGSRVLALAYKSLPDMTVSEARGLDRDTVESDLTFAGFAVFNCPIRADSATVLSELKGSSHDLVMITGDQALTACHVASQVHITSKQILILNSMKGTEEYEWLSPDESQTVPYREKEVGTLSETYDLCIGGDCIAMLQRTSTVLDVIPYVKVFARVAPEQKELILTTFKTVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPPQSGNSSSEASKDEAVRSAKSKKSKPSSESSGKALVSGEGSSKSKGGAKLDSAAEQASNRPRTPAEMQRQKLKKLMDELNEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGVFTAAFFLFISHARPLPTLSAERPHPHIFCSYVLLSLLGQFAIHLCFLISSVKEAEKHMPDECIEPDSDFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLAAVGFFTVITSDLFRDLNDWLKLVPLPVGMRDKLLAWALLMFLCCYSWERLLRFMFPGKIPAWRKRQRLVAANLEKKKQV 1192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30603481 30624269 - ClCG02G016210.2 Cla02g01593 267719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01593 1192 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Cla02g01593 1192 SUPERFAMILY Calcium ATPase, transduction domain A 256 387 IPR008250 -
Cla02g01593 1192 Pfam E1-E2 ATPase 256 468 - -
Cla02g01593 1192 Gene3D - 669 847 IPR023214 -
Cla02g01593 1192 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 403 517 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla02g01593 1192 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 774 828 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla02g01593 1192 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Cla02g01593 1192 SUPERFAMILY HAD-like 483 834 IPR036412 -
Cla02g01593 1192 MobiDBLite consensus disorder prediction 847 861 - -
Cla02g01593 1192 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1169 IPR023298 -
Cla02g01593 1192 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 42 1149 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Cla02g01593 1192 Pfam haloacid dehalogenase-like hydrolase 485 713 - -
Cla02g01593 1192 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 1186 - -
Cla02g01593 1192 Coils Coil 896 916 - -
Cla02g01593 1192 Gene3D - 224 388 - -
Cla02g01593 1192 SFLD C1.7: P-type atpase like 469 955 - -
Cla02g01593 1192 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Cla02g01593 1192 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Cla02g01593 1192 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Cla02g01593 1192 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Cla02g01593 1192 PANTHER CATION-TRANSPORTING ATPASE 1 1186 - -
Cla02g01593 1192 SFLD p-type atpase 469 955 IPR044492 -
Cla02g01593 1192 MobiDBLite consensus disorder prediction 830 903 - -
Cla02g01593 1192 Gene3D - 483 668 IPR023299 GO:0000166
Cla02g01593 1192 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
Cla02g01593 1192 CDD P-type_ATPase_cation 170 1107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01593 Cla-Chr2:30603481 Cla05g02106 Cla-Chr5:32672272 4.44E-20 dispersed
Cla02g01593 Cla-Chr2:30603481 Cla09g01799 Cla-Chr9:35503369 1.26E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01593 K14950 - csv:101215828 2291.54