Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01637 ATGGAATCGGGGCAGAACGATGAGTGCAGAGCGATCTTGATCAATTTCGAGCAAACGGAGCTCCGCCTGGGATTGCCCGGCGGCGAAATCGGCGGCGGAAAGAGTAATTCGGCTGGGAAGAGAGGGTTTATGGAAACTGTGGATTTGAAGCTTAATTTATCTTCTTCAATGGCGTCTGTGAAGGAGGAAGCGACGAATTTGGAAGAGATTAAAAGTTCTTCGCAACGGCCTAACGATTTTGCTAAACCTCCTTCCAAAGCACAAGTAGTGGGTTGGCCACCAGTTAGATCATCAAGGAAGAATTTGGGAGCGGCGAGGAACGGCGGCGATGACGGCGGCGCGTCGTTCGTAAAAGTTAGCGTGGACGGAAAGTGGGAATCAGAAGGAATGAAGGATTTCATGAATGAAAGAAAATTGGTAGACCTTTTGAATGGTTCAGAATATGTACCCACTTATGAAGACAAAGATGGAGATTGGATGCTTGTTGGAGATGTGCCATGGGAGATGTTTGTTGATTCATGCAAACGTTTGAGGATCATGAAAGAGTCTGAAGCCATTGGATTAGCCCCCTGTGTGTTCCTCCGCCGTCTTCAACCTCCCCGTTGCAACAACATCCTCCTCCCCACGGTTGCGCCCATTCTTCTCCGATCAGGTAGTAGGCCTTTCGGTGGCAGAACAACTGCCAAATATAGCACTGCAGCTGCTGTTGAAGATCCTATTACTCCATCTGTGAAAGTGAATTACACCCAGTTGTTAATCAATGGACAGTTTGTGGATTCAGTCTCAGGAAAAACTTTTCCTACTTTGGATCCAAGGACTGGGGGAGTCATTGCAAATGTTGCTGAAGGTGATGCTAAAGATGTTGATCTTGCAGTTTCTGCTGCACGCAGGGCGTTTGATGAAGGTCCTTGGCCTAGAATGACTGCTTATCATGCCGATGAAGTTGCAGCACTCGAAACATGGGATAATGGTAAAACATATGAACAATCAGCAAAAATTGAAGTCCCGATGTTCGTACGCCTCTTTCGATACTATGGCGGATGGGCGGATAAGATCCATGGACTCACAGTTCCTGCTGATGGCTCGTATCATGTGCAGACATTGCATGAACCGATTGGCGTGGCGGGTCAGATCATTCCATGGAACTTCCCTCTGCTTATGTTTGCTTGGAAGGTTGGTCCAGCGTTAGCATGTGGGAATACTATTGTTCTGAAGACAGCTGAGCAGACACCTTTGTCTGCTCTCTTTGTGGCTAAGCTATTGCATGAGGCTGGACTTCCTGAGGGCGTTCTGAATATTGTTTCGGGTTATGGACCCACTGTTGGTGCTGCTATTGCCAGTCATATGGAAGTTGATAAGCTTGCTTTTACCGGATCAACTGAAACAGGGAAGATTGTACTTGAATTAGCTGCAAAAAGCAATTTGAAGCCAGTAACGTTGGAGCTTGGTGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTAGACAAGGCTGTGGAGATGGCACACTTTGCTCTCTTCTTCAACCAGGGACAATGTTGCTGTGCTGGTTCTCGTACTTTCGTTCATGAAAAAGTATTCGACGAGTTTCTAGAAAAAGCAAGAAAACGAGCTGCGAACCGCGTTGTTGGTGATCCTTTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTCGATGAAGAACAATTCAAAAAGATATTGAAATATATAAAACTTGGGATTGAAGGAGGAGCCACTCTTGAAGCAGGAGGAGAAAGGTTTGGTTCCAAGGGTTACTATGTCCAACCAACAGTTTTCTCAAATGTCAAGGATGACATGAAAATTGCACAGGAGGAGATTTTTGGTCCTGTACAAACAATCTTGAAATACAAAGAGATTGATGAGGTGATAAGGAGGGCAAATGCTAGTCCTTATGGGCTGGCTGCTGGAGTGTTTACTCAAAATATCGACACAGCTAACCGGTTGACACGTGCGTTGAGAGTAGGGTCAGTATGGATCAATTGCTTTGATATATTTGATGCTGCAGTTCCTTTTGGAGGGTACAAGATGAGTGGACATGGGAGAGAAAAGGGAATTTACAGCCTTAGCAATTACCTGCAAGTGAAGGCTGTTGTGACTCCTTTGGAAAAGCCTGCTTGGCTTTAG 2145 45.83 MESGQNDECRAILINFEQTELRLGLPGGEIGGGKSNSAGKRGFMETVDLKLNLSSSMASVKEEATNLEEIKSSSQRPNDFAKPPSKAQVVGWPPVRSSRKNLGAARNGGDDGGASFVKVSVDGKWESEGMKDFMNERKLVDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKESEAIGLAPCVFLRRLQPPRCNNILLPTVAPILLRSGSRPFGGRTTAKYSTAAAVEDPITPSVKVNYTQLLINGQFVDSVSGKTFPTLDPRTGGVIANVAEGDAKDVDLAVSAARRAFDEGPWPRMTAYHADEVAALETWDNGKTYEQSAKIEVPMFVRLFRYYGGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALFVAKLLHEAGLPEGVLNIVSGYGPTVGAAIASHMEVDKLAFTGSTETGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVFDEFLEKARKRAANRVVGDPFLGGIEQGPQVDEEQFKKILKYIKLGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMKIAQEEIFGPVQTILKYKEIDEVIRRANASPYGLAAGVFTQNIDTANRLTRALRVGSVWINCFDIFDAAVPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLEKPAWL 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31170876 31187629 + ClCG02G016650.2 Cla02g01637 267763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01637 714 Gene3D - 124 193 - -
Cla02g01637 714 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 508 519 IPR016160 GO:0016491
Cla02g01637 714 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 253 702 IPR016162 GO:0016491
Cla02g01637 714 MobiDBLite consensus disorder prediction 67 93 - -
Cla02g01637 714 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 217 714 - -
Cla02g01637 714 ProSiteProfiles PB1 domain profile. 100 182 IPR000270 GO:0005515
Cla02g01637 714 CDD ALDH_F2BC 246 706 - -
Cla02g01637 714 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 217 714 - -
Cla02g01637 714 SUPERFAMILY ALDH-like 245 707 IPR016161 GO:0016491
Cla02g01637 714 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 480 487 IPR029510 GO:0016491
Cla02g01637 714 Pfam AUX/IAA family 126 190 IPR033389 -
Cla02g01637 714 Pfam AUX/IAA family 37 123 IPR033389 -
Cla02g01637 714 Pfam Aldehyde dehydrogenase family 257 704 IPR015590 GO:0016491
Cla02g01637 714 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 484 673 IPR016163 GO:0016620
Cla02g01637 714 SUPERFAMILY CAD & PB1 domains 112 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01637 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - csv:101202756 935.636
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01637 Cla-Chr2:31170876 Cla06g00929 Cla-Chr6:15608741 1.76E-55 dispersed
Cla01g01428 Cla-Chr1:28755830 Cla02g01637 Cla-Chr2:31170876 1.79E-12 transposed
Cla01g01786 Cla-Chr1:32802509 Cla02g01637 Cla-Chr2:31170876 2.50E-36 transposed
Cla02g01678 Cla-Chr2:31646273 Cla02g01637 Cla-Chr2:31170876 2.63E-49 transposed
Cla02g01832 Cla-Chr2:33460980 Cla02g01637 Cla-Chr2:31170876 5.95E-13 transposed
Cla02g02255 Cla-Chr2:37667002 Cla02g01637 Cla-Chr2:31170876 5.38E-30 transposed
Cla06g00431 Cla-Chr6:5264023 Cla02g01637 Cla-Chr2:31170876 5.97E-61 transposed
Cla06g01016 Cla-Chr6:21540909 Cla02g01637 Cla-Chr2:31170876 0 transposed
Cla06g01634 Cla-Chr6:29857602 Cla02g01637 Cla-Chr2:31170876 1.23E-110 transposed
Cla06g01654 Cla-Chr6:30056618 Cla02g01637 Cla-Chr2:31170876 0 transposed
Cla07g00849 Cla-Chr7:23698655 Cla02g01637 Cla-Chr2:31170876 2.95E-33 transposed
Cla09g00097 Cla-Chr9:955896 Cla02g01637 Cla-Chr2:31170876 1.93E-29 transposed
Cla09g01595 Cla-Chr9:31974256 Cla02g01637 Cla-Chr2:31170876 1.50E-36 transposed
Cla11g01542 Cla-Chr11:29112558 Cla02g01637 Cla-Chr2:31170876 2.87E-23 transposed
Cla02g01637 Cla-Chr2:31170876 Cla06g00625 Cla-Chr6:7670123 5.63E-55 wgd
Cla02g01637 Cla-Chr2:31170876 Cla09g00698 Cla-Chr9:6792369 5.72E-49 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g01016 . 1 505 Aldehyde Dehydrogenase Gene Family AT3G24503 69.4 1.6e-210 729.2
Cla06g01654 . 66 550 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 2.3e-153 539.3
Cla02g01637 . 245 714 Aldehyde Dehydrogenase Gene Family AT3G24503 52.9 2.6e-149 525.8
Cla06g01654 . 1 550 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 2.2e-250 861.7
Cla02g01637 . 211 714 Aldehyde Dehydrogenase Gene Family AT3G48000 72.9 5.1e-231 797.3
Cla06g01016 . 18 505 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 3.2e-161 565.5
Cla06g01654 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 6.2e-165 577.4
Cla02g01637 . 225 564 Aldehyde Dehydrogenase Gene Family AT1G23800 75.6 1.8e-156 549.3
Cla06g01016 . 18 349 Aldehyde Dehydrogenase Gene Family AT1G23800 54.5 1.5e-102 370.2
Cla11g01542 . 613 1071 Aldehyde Dehydrogenase Gene Family AT4G34240 60.3 2.4e-164 575.9
Cla11g01542 . 678 1069 Aldehyde Dehydrogenase Gene Family AT1G44170 68.1 1.3e-162 569.7
Cla02g02255 . 62 455 Aldehyde Dehydrogenase Gene Family AT1G44170 50.3 1.4e-111 400.2
Cla07g00849 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 7.1e-184 640.6
Cla02g02255 . 2 457 Aldehyde Dehydrogenase Gene Family AT4G36250 54.9 5.5e-152 534.6
Cla02g01832 . 46 614 Aldehyde Dehydrogenase Gene Family AT1G79440 55.3 3.8e-162 568.5
Cla09g01595 . 5 505 Aldehyde Dehydrogenase Gene Family AT2G14170 75.7 1.6e-222 769.2
Cla01g01786 . 262 696 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.4e-181 632.5
Cla06g01634 . 1 507 Aldehyde Dehydrogenase Gene Family AT1G74920 80.9 7.7e-250 859.8
Cla06g01634 . 1 509 Aldehyde Dehydrogenase Gene Family AT3G48170 80.7 1.1e-251 865.9
Cla02g01678 . 46 558 Aldehyde Dehydrogenase Gene Family AT2G24270 87.7 6.5e-265 909.8
Cla01g01428 . 21 576 Aldehyde Dehydrogenase Gene Family AT5G62530 75.0 4.3e-257 884.0
Cla06g00431 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.2e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001596 2 4 2 1 4 2 3 2 2 1 2 2 3 1 2 3 2 3 3 2 2 3 2 2 2 2 2 2 3 5 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60681 PF00171 Aldedh 3.10E-163 CL0099 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g01637 Cla_Chr02 FPKM 46.741039 52.114529 11.55347 10.648187 36.167339 34.521118 35.508911 20.65752 20.906237 22.88443