Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g01662 ATGATGGCGAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCGGGAGTTGATCATACATCGACCAGCTCCTCCACCATGAGAAAACCAGATCTGGGAATCTCCATGAACGACAACGGTGGACCCGTTAACAGCGGTGGTGTCGATGACGATGACGATAGAGATAACGGTGGTGATGAACCTAAAGAAGGAGCTGTCGAAGTTCCAACGCGCCGTCCTCGTGGCCGTCCACCGGGCTCCAAGAATAAGCCTAAGCCTCCTATCTTCGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGAGCTGATATCGCGGAAAGCATTGCTCAATTTGCTCGACGGCGACAGAGAGGTGTTTCTGTGCTTAGTGGCAGCGGTACGGTAACGAATGTCACACTCCGGCAACCATCTGCGCCCGGTGCAGTCTTAACCCTTCACGGCCGGTTCGAGATTCTTTCTTTGACTGGAACTTTCCTCCCCGGACCAGCCCCACCCGGGTCAACTGGACTAACAATCTACTTGGCCGGTGGACAAGGGCAGGTGGTGGGTGGCAGCGTAGTCGGGCCACTCACCGCTGCCGGCCCAGTGATGGTGATCGCTGCAACGTTTTCCAACGCGACATACGAAAGATTACCTTTGGAAGAGGAAGAAGAAGGCGGCGGAGTAGGAGCACAAGGGCACACATCAGCAGGCGGTGGTGCAGGCGACGGTTCGCCACAAGGCATCGGAGGCGGAGGCGGAGTCGGAGATCCGTCAGCTATGCCTCCGCTGTACAATTTACCGCCGAACTTGCTACCGAATGGCGGCGGCGGGCAGATGAATCAGGAGGCTTATTCGTGGGCTCACGGCGGCCGGCCGTCGTTTTAA 888 56.53 MMANRWWTSGQMGLPGVDHTSTSSSTMRKPDLGISMNDNGGPVNSGGVDDDDDRDNGGDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESIAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGVGAQGHTSAGGGAGDGSPQGIGGGGGVGDPSAMPPLYNLPPNLLPNGGGGQMNQEAYSWAHGGRPSF 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31457488 31458556 + ClCG02G016940.1 Cla02g01662 267788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g01662 295 Gene3D - 99 225 - -
Cla02g01662 295 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Cla02g01662 295 MobiDBLite consensus disorder prediction 1 95 - -
Cla02g01662 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 8 294 - -
Cla02g01662 295 CDD DUF296 99 182 IPR005175 -
Cla02g01662 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cla02g01662 295 MobiDBLite consensus disorder prediction 14 42 - -
Cla02g01662 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 294 IPR014476 GO:0003680
Cla02g01662 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 212 IPR005175 -
Cla02g01662 295 MobiDBLite consensus disorder prediction 221 278 - -
Cla02g01662 295 PIRSF ESCAROLA 12 295 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01662 Cla-Chr2:31457488 Cla07g00325 Cla-Chr7:3777463 1.12E-81 dispersed
Cla02g01662 Cla-Chr2:31457488 Cla06g00647 Cla-Chr6:7991313 1.73E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g01662 - - csv:101220902 418.313